Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11019
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 130 1e-31
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 130 1e-31
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.57
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.75
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 1.7
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.3
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.3
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 25 9.3
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 9.3
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 130 bits (315), Expect = 1e-31
Identities = 56/83 (67%), Positives = 73/83 (87%)
Frame = +1
Query: 7 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
R+RK A+R GRH G+GKR+G
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKG 83
Score = 86.2 bits (204), Expect = 4e-18
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K TA ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+
Sbjct: 82 KGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEH 141
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVK 506
I R KAE RTK++ +Q +ARR + K
Sbjct: 142 IQRAKAEANRTKLIQEQQDARRARAK 167
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 130 bits (315), Expect = 1e-31
Identities = 56/83 (67%), Positives = 73/83 (87%)
Frame = +1
Query: 7 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
R+RK A+R GRH G+GKR+G
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKG 83
Score = 86.2 bits (204), Expect = 4e-18
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K TA ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+
Sbjct: 82 KGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEH 141
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVK 506
I R KAE RTK++ +Q +ARR + K
Sbjct: 142 IQRAKAEANRTKLIQEQQDARRARAK 167
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 150 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 61
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 129 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 34
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 390 GNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLPPRRRNCCRPS 569
G + K + V +E H+ + A T EA K +S A+N L +R+ +
Sbjct: 1414 GFLDKLRNVKLESHHKPRNRSAITMGKEHLIEAPNTSTK--SSPAKNELFVPKRSSVKSD 1471
Query: 570 LEKTKPRLP 596
L K +PR P
Sbjct: 1472 LAKVRPRYP 1480
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 423 EYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLPPRRRN 554
E I R + T+M Q +ARR +V+ + R + +RRN
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 445 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 353
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +1
Query: 67 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 213
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 214 RRKGR 228
R+ R
Sbjct: 349 RKSLR 353
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 265 ALAVLFSYQSHSDDPFYVL 209
ALA+LF+ S+ PF+VL
Sbjct: 1141 ALALLFAIHSYQPSPFFVL 1159
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 121 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 237
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 298 LCTHSSFCGIRALAVLFSYQSHSD 227
LC HS GIR L+++F + SH D
Sbjct: 126 LC-HSK-SGIRLLSIIFDFDSHPD 147
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 10 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 135
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,736
Number of Sequences: 5004
Number of extensions: 50214
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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