Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11019
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 5e-34
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.34
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 31 1.1
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 29 2.4
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7) 28 5.6
SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2) 27 9.8
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 27 9.8
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.8
SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065) 27 9.8
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 141 bits (341), Expect = 5e-34
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +1
Query: 1 VRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 180
V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VH
Sbjct: 27 VHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVH 86
Query: 181 SRARVRKNTEARRKGRHCGFGKRRG 255
SRARVRK EAR KGRH G GKR+G
Sbjct: 87 SRARVRKADEARSKGRHSGHGKRKG 111
Score = 126 bits (303), Expect = 2e-29
Identities = 60/86 (69%), Positives = 66/86 (76%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K TANARMPQK +W AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVK 506
IH+KKAEKAR+K+LSDQAEARRNK K
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNKNK 195
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 58 GKKKVWLDPNEINEIANTNSR--QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRH 231
G K+V NE+N+ N NSR QN R K G + + + ++RKN + +
Sbjct: 1002 GPKQVLQHTNELND-PNRNSRREQNKRNKAKKGKQVGQNNTKSKKRKIRKNAKRNNNKKG 1060
Query: 232 CGFGKRRGQ 258
+ K RG+
Sbjct: 1061 VHYRKARGR 1069
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 489 RRNKVKEHASAARNV-LPPRRRNCCRPSLEKTKPRLPL 599
R N V AS +R PP +N +P ++KTKP PL
Sbjct: 182 RNNIVLSTASWSRKTSAPPSEKNAFQPPMKKTKPSSPL 219
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1
Query: 553 FLLLGGNTFLAALACSF 503
F L+GG TFLAALAC F
Sbjct: 70 FALMGGLTFLAALACWF 86
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 450 KARTKMLSDQAEARRNKVKEHASAARNVLPPRR---RNCCRPSLEKTKPRL 593
KA L D+ EA RN++++ A+RN L R RN R E ++ RL
Sbjct: 949 KALCNRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRL 999
>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
Length = 381
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -1
Query: 313 LKTLCLCTHSSFCGIRALAVLFSYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 167
L+ LC C HS+ G L L Y HS +L LC+ GH G++LL+
Sbjct: 91 LRALCYCGHSAIVGTLLLWAL-CYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 313 LKTLCLCTHSSFCGIRALAVLFSYQSHSDDPFYVL--LCFCGHE--RGSVLLQ 167
L+ LC HS+ G L LF Y ++ +L LC+ GH G++LL+
Sbjct: 210 LRALCYYGHSAITGTMLLRALFYYGHYAITGTLLLRALCYYGHYAITGTMLLR 262
>SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 550 LLLGGNTFLAALACSFTLLRRASAW 476
LLLG +TF++ C+FT+LR S++
Sbjct: 198 LLLGYSTFISVSFCNFTVLRLLSSF 222
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +3
Query: 345 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAA 524
+ R Y +LY KGN F + L++ E+ R K + ++++ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 525 RNVLPPRRRNCCRP 566
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
Length = 465
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 130 RKMIKDGLVIKKPVAVHSR-ARVRKNTEARRKG-RHCGFGKRRGQPMRVCHRRNYGY 294
RK+IK+ + KKP H + A K E G + F +++G ++ +RN Y
Sbjct: 224 RKLIKESEMSKKPTVGHQKEAGYHKAPEREFLGEKRLLFERKKGAEKQLLQKRNENY 280
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 399 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLP 539
F+ + MEY + EKA K+ Q++A R K+ A ++P
Sbjct: 80 FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIKLTVSIQAPFIIIP 126
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 387 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLP 539
K NK E + K +TK D+ + +NK KE+ +A R + P
Sbjct: 496 KDKTKNNKDKTKENKDKTNENKDKTKENKDKTKENKNKTKENKTANRPLTP 546
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 468 LSDQAEARRNKVKEHASAARNVLP 539
L+DQ E R ++ +HA AR LP
Sbjct: 239 LTDQLEQERKRITQHACPARRKLP 262
>SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)
Length = 202
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -1
Query: 340 AVLYFRSNFLKTLCLCTHSSFCGIRALAVLFSYQSHSDDPFYVLLCFCGHERGSVLLQVS 161
AV + C+ S CGI +A + + F +C+C E G++ L +S
Sbjct: 91 AVTSIKQELTNPYCIGVPYSSCGICGVAGSGNVSTSQCSAFGENMCYCSREAGTLYLLLS 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,534,792
Number of Sequences: 59808
Number of extensions: 403084
Number of successful extensions: 1343
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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