Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11019
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   130   8e-31
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    39   0.003
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    29   3.7  
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    28   4.9  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    27   8.6  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  130 bits (314), Expect = 8e-31
 Identities = 55/83 (66%), Positives = 73/83 (87%)
 Frame = +1

Query: 7   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
            R R+  EARRKGRH G+GKRRG
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRG 83



 Score =  101 bits (241), Expect = 6e-22
 Identities = 47/85 (55%), Positives = 58/85 (68%)
 Frame = +3

Query: 255 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH 434
           TANARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EYI 
Sbjct: 84  TANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIF 143

Query: 435 RKKAEKARTKMLSDQAEARRNKVKE 509
           +KK E  R K L+DQA+ARR+K KE
Sbjct: 144 KKKTENKRAKQLADQAQARRDKNKE 168


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 318 IFLKPFVFVPIVPSVAYAHWLSSSLTKATVTT-LSTCFCVFADTSAGVYCYRFLDDETIL 142
           IF++PF    IV    +  W +  L  A +   ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 141 DHLTDVLSGVGVCDLIDFI 85
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 103  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 237
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 550 LLLGGNTFLAALACSFTLLRRAS-AWSLSIFVL-AFSAFFLWMYSMSTRLFLNTLPFAFM 377
           ++L   T    + CS+ LL      W  + F   A +AF+++MYSM    F   +   F 
Sbjct: 480 IILSIVTVCVTIVCSYFLLNAEDYRWRWTSFACGASTAFYVYMYSMYYFFFKTKMYGLFQ 539

Query: 376 *SEWYRCLSIFLAVL 332
              ++  + IF A L
Sbjct: 540 TVFYFGYMGIFAAAL 554


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 507 EHASAARNVLPPRRRNCCRPSLEKTKPRLP 596
           E+    R++L P+ R+C  PS++K+   LP
Sbjct: 45  EYQPLHRHMLTPKSRDCSEPSIDKSSEVLP 74


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 366 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARN 530
           H     A+ N  K + V++   H+KKA      +    A ARRN ++  A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 115 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 228
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 304 LCLCTHSSFCGIRALAVLFSYQSHSDDPFYVLLCFCGHERGSVLLQ 167
           +C+ T S+   I A+ +L++Y  H     +  + FC H    + +Q
Sbjct: 21  ICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRTVGLFIQ 66


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 438 KKAEKARTKMLSDQAEARRNKVKEHASAARNVLPPRRRNCCRPSLEK 578
           KKAEK +++++  QAEA++N  K   +  +     +     R  L+K
Sbjct: 132 KKAEKVKSELVVPQAEAQKNTPKSVVARKKETKEAKDAKEAREELKK 178


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 327 SGAIFLKPFVFVPIVPSVAYAHWLSSSLTKATVTTLSTCFCVFADTSAGVYCYRF 163
           +G +F +   +  I+P V+     + + T A +TT      V  D+S   YCY F
Sbjct: 312 NGYVFRRILPYQCILPPVSTTTVPAPTTTAAPLTTCQNGGQVLKDSSGSPYCYCF 366


>Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.2 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 304 LCLCTHSSFCGIRALAVLFSYQSHSDDPFYVLLCFCGHERGSVLLQ 167
           +C+ T ++   I A+ +L++Y  H        + FC H    +  Q
Sbjct: 25  ICISTVATLTAIVAIPLLYNYMQHVQSTLQTEVDFCKHRTNGLFDQ 70


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 279 SVAYAHWLSSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDE 151
           S  Y  W + +L K     L  C CV   +S      +FLD E
Sbjct: 137 SKQYEDWRNVTLIKGYERELEKCDCVLTSSSTETGTVKFLDRE 179


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 367 WYRCLSI-FLAVLYFRSNFLKTLCLCTHSSFCGIRALAVLFSYQ 239
           WY    + +L  L+  S  L T+C+CT  S   I AL+VL +++
Sbjct: 360 WYMLAYVSYLPKLW--SGVLLTICICTMFSVITILALSVLSTFE 401


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 355 LSIFLAVLYFRSNFLK 308
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,481
Number of Sequences: 27780
Number of extensions: 296596
Number of successful extensions: 1035
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)