Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11019
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 128 2e-30
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 126 9e-30
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 126 2e-29
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At1g26720.1 68414.m03254 expressed protein ; expression supporte... 30 1.1
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 29 2.6
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.5
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.1
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.1
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 28 6.1
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 6.1
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 6.1
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.0
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 128 bits (310), Expect = 2e-30
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = +1
Query: 7 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
+R R EA+RKGRH G+GKR+G
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKG 83
Score = 99 bits (238), Expect = 1e-21
Identities = 51/93 (54%), Positives = 59/93 (63%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K T AR+P K LW +KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVKEHASAAR 527
IH+ KAEKAR K L+DQ EA+R +K AS R
Sbjct: 142 IHKMKAEKAREKTLADQFEAKR--IKNKASRER 172
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 126 bits (305), Expect = 9e-30
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = +1
Query: 7 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
+R RK A+ KGRH G+GKR+G
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKG 83
Score = 99.1 bits (236), Expect = 2e-21
Identities = 48/86 (55%), Positives = 55/86 (63%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K T AR+P K LW KKID+H+YH +YM+ KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMES 141
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVK 506
IH+ KAEKAR K LSDQ EA+R K K
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNK 167
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 126 bits (303), Expect = 2e-29
Identities = 54/83 (65%), Positives = 71/83 (85%)
Frame = +1
Query: 7 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 186
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 187 ARVRKNTEARRKGRHCGFGKRRG 255
+R R+ A+RKGRH G+GKR+G
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKG 83
Score = 101 bits (242), Expect = 4e-22
Identities = 50/86 (58%), Positives = 55/86 (63%)
Frame = +3
Query: 249 KRTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 428
K T AR+P K LW KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVK 506
IH+ KAEKAR K LSDQ EA+R K K
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNK 167
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 342 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 452
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At1g26720.1 68414.m03254 expressed protein ; expression supported
by MPSS
Length = 169
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 RQNIRKMIKDGLVIKKPV-AVHSRARVRKNTEARRKGRHCGFGKRRGQPM 264
R+N++ + D L KPV A RA + NTEAR G G+ Q M
Sbjct: 26 RKNLQDKLGDTLFASKPVEATELRAALVSNTEARDISGSIGLGEVGSQEM 75
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 429 IHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLPPRRRNCCRPSLEKTKPRLPL 599
+H +K EK + +A++ K K H S PP++RN C S + K L +
Sbjct: 603 VHNRKNEKRGIHLPQKRAKSPITKGKSHESP-----PPKKRNTCSVSSQTRKVSLKI 654
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 478 WSLSIFVLAFSAFFLWMYSMSTRL 407
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 167 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 72
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 83 GSNHTFFLPHRITEAASLFCSLRELI 6
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 387 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEHASAARNVLPPRRR 551
KG+ + ++ E + +KK EKAR + ++ AE R + + A+A R+R
Sbjct: 562 KGDPERLRKEREELVLQKKKEKARLQAEAEAAEDARRQAEAEAAAEAAAEAKRKR 616
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 497 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 381
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 145 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRR 252
D + KK + + + ++RKN + RR+G G G RR
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRR 112
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 339 AKKIDRHLYHSLYMKAKGNVFKNKRVL 419
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,007
Number of Sequences: 28952
Number of extensions: 277649
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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