Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11018
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0174 + 12263843-12265126                                         31   1.3  
08_02_1448 - 27168389-27172021                                         29   4.1  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    29   4.1  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    29   4.1  
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    29   5.4  

>04_03_0174 + 12263843-12265126
          Length = 427

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 186 FIHEYTLAKDSKVQSGRNNLFLFLFYDIPSNSVCSTT 296
           F HE  +A  SK + GR  +FLF  +D P+ S  S T
Sbjct: 259 FFHEAVMAS-SKPKQGRIRVFLFAAHDAPATSSTSPT 294


>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 493  LKPLKLVLCRSL*ILVTFIGRTSFLKHIAYTFWLYYNVAL-DVKDIVVSLPLLSAVASF* 669
            L+ L+L  CR L  L + +G  + L+H+ Y    Y    L D  D +VSL +L   A   
Sbjct: 1088 LQDLRLESCRRLVALPSNLGNLAMLRHL-YLMNCYVLKDLPDGMDGLVSLKILEIQACAE 1146

Query: 670  LVDFPSNIV 696
            + +FP  ++
Sbjct: 1147 IEEFPQGLL 1155


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 FIHEYTLAKDSKVQSGRNNLFLFLFYDIPS 275
           F HE  +A  SK + GR  +FLF   D P+
Sbjct: 815 FFHEAVMATSSKPKQGRIRVFLFAADDAPA 844


>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 124  LELIEFNTLSHISQSINSMKDLYTSILLRKTVKYKVEE 237
            LE ++  T S I+    + KDL  +I+L  + K KVEE
Sbjct: 1157 LETVQAETASKINDMETNTKDLVNTIVLLSSQKNKVEE 1194


>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 172 NSMKDLYTSILLRKTVKYKVEEIIYFCFYFTIFHRI---AFARQLNLKGCNILCRNVF*K 342
           NS +D Y  I      + +V E++ FC  F + H +    + R++   G  +LC+  F +
Sbjct: 116 NSNEDAYGWISHALQKQARVLEVVVFCCLFELDHSVFTSCYLRRIAFSGI-VLCKGFFAQ 174

Query: 343 FHVGV*SLK 369
              G  +L+
Sbjct: 175 LEAGCPALE 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,983,875
Number of Sequences: 37544
Number of extensions: 365268
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)