Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11018
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.8  
SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)                      30   1.8  
SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)                   28   7.3  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 7   NAIYISVCLFDTAPYSTQDTIKQFCFVTQIGNVSR*IFFLELIEFNTLSHISQSINSMKD 186
           N+++ISVCL    P ST+  ++   FV++          L L+E  TLS I   +N  K 
Sbjct: 90  NSVFISVCLIPDPP-STEYRLEYMFFVSRTAVPG--AVELHLLETGTLSVIRSCVNKAKA 146

Query: 187 L 189
           L
Sbjct: 147 L 147


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 63  HNKTILFCYTNWECE*INFFPGID*IQHLITHKSVYKFNEGFIHEYTLAKD 215
           HN  +L C+   +C+   F   +  I+ LI  +S  K N+GFIH Y+ +K+
Sbjct: 665 HN-LMLDCWHKDKCKRPKFVDIVQRIEDLI--RSPEKLNDGFIHAYSFSKN 712


>SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)
          Length = 551

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/60 (21%), Positives = 34/60 (56%)
 Frame = +1

Query: 157 ISQSINSMKDLYTSILLRKTVKYKVEEIIYFCFYFTIFHRIAFARQLNLKGCNILCRNVF 336
           +++ + S++++ T+ L +   +Y  E + +      I + ++F +++N  G   +CRN+F
Sbjct: 405 LNKDLTSLEEIATASLAQHKFRYLFEGLGHLVSSILISN-LSFIKKINQNGIKKMCRNIF 463


>SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 HISQSINSMKDLYTSILLRKTV-KYKVEEIIYFCFYF 261
           HI+ ++ SMK L  +I L+ T  K  V+ ++Y   YF
Sbjct: 123 HITNTLESMKGLKLTITLKTTFSKTSVDNVLYKTAYF 159


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 730  IESPLDKHRTKKQC*KGNPPTKSWQLLKVRARRLQ 626
            ++  L++ + K    +GNP T++W+ L+ R R L+
Sbjct: 3890 LKKELEQAKAKPLTRRGNPVTRAWRRLRERVRDLR 3924


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,584,480
Number of Sequences: 59808
Number of extensions: 486649
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)