Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11018
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB020807-1|BAA78631.1|  796|Homo sapiens TLR6 protein.                 31   3.5  

>AB020807-1|BAA78631.1|  796|Homo sapiens TLR6 protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
 Frame = +3

Query: 114 NFFPGID*IQHLI-----THKSVYKFNEGFI------HEYTLAKDSKVQSGRNNLFLFLF 260
           NF PG   ++++I     ++KS++  +  F+      +E   A  +    G NNL L L 
Sbjct: 677 NFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNNLILILL 736

Query: 261 YDIPSNSV 284
             IP NS+
Sbjct: 737 EPIPQNSI 744


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,332,514
Number of Sequences: 237096
Number of extensions: 2200329
Number of successful extensions: 2624
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2624
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)