Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11017X
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 95 8e-21
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 94 1e-20
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 4.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.3
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 7.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.3
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 9.7
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 94.7 bits (225), Expect = 8e-21
Identities = 47/80 (58%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +2
Query: 41 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59
Query: 221 AWRHFYWYLTN-GVLNT*EY 277
W FY+ LTN GV EY
Sbjct: 60 NWGWFYYTLTNEGVEYLREY 79
Score = 60.1 bits (139), Expect = 2e-10
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVA 435
G+EYLR +LHLP E+VPAT KR VR R GRP+ RS+ + YRR
Sbjct: 72 GVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA------- 121
Query: 436 PHDKKAD-VGPGSADLEFKGGYGR 504
+KK D PG F+GG+GR
Sbjct: 122 --EKKDDGAAPGGFAPSFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 94.3 bits (224), Expect = 1e-20
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +2
Query: 41 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59
Query: 221 AWRHFYWYLTN-GVLNT*EY 277
W FY+ LTN GV EY
Sbjct: 60 NWGWFYYTLTNEGVEYLREY 79
Score = 55.2 bits (127), Expect = 6e-09
Identities = 34/83 (40%), Positives = 43/83 (51%)
Frame = +1
Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVA 435
G+EYLR +LHLP E+VPAT KR VR R GRP+ R++ D + YRR
Sbjct: 72 GVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA------- 120
Query: 436 PHDKKADVGPGSADLEFKGGYGR 504
K P F+GG+GR
Sbjct: 121 -EKKDEGAAPSGFAPSFRGGFGR 142
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 398 DLSSAERAGASGRPTGPRRT 339
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 123 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 215
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 364 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 477
P+A S+ +Y + A+ P +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 320 RLSVAGTISGGRCKNILKY 264
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 292 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 399
P I P ++ V TVR G PD P+ S R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 202 LCQRTVCLEALLLVPNQWGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 363
+ R + E LL P IEYL + PP + P L + E + G +GR
Sbjct: 184 IVHRDIKPENLLFQP----IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,102
Number of Sequences: 5004
Number of extensions: 40160
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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