Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11017X
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 126 2e-29
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 1.1
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.9
SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017) 29 3.3
SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28) 29 3.3
SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017) 28 4.4
SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017) 28 4.4
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.8
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 27 7.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 126 bits (303), Expect = 2e-29
Identities = 52/71 (73%), Positives = 65/71 (91%)
Frame = +2
Query: 41 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 221 AWRHFYWYLTN 253
W+H+YW LTN
Sbjct: 61 CWKHYYWNLTN 71
Score = 68.9 bits (161), Expect = 3e-12
Identities = 45/89 (50%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +1
Query: 256 GIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE-DRSAYRRTPAA 423
GI YLR FLHLP EIVPATL+R V R ET R P G P P + DR +YRR P
Sbjct: 73 GITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGDRDRESYRRGP-P 131
Query: 424 PGVAPHDKKADVGPGSADLEFKGGYGRGS 510
PGV + K G G EF+ G+GRG+
Sbjct: 132 PGV---EGKGGAGSGFKP-EFRQGFGRGA 156
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 409 RTPAAPGVAPHDK-KADVGPGS 471
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 418 AAPGVAPHDKKADVGP 465
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)
Length = 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 223 LEALLLVPNQWGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RGPVGRPDAPARSAEDR 396
+EAL P Q L L LPP I+P+ V E V P+ +P P R++ R
Sbjct: 38 VEALTNAPPQTPSAELLKGLPLPPRIIPSNTSERVLDEPVPEINVPILKPSQPTRNSHVR 97
>SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)
Length = 403
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 253 WGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRP 366
W +E IFL++P P LK+SV + VR P P
Sbjct: 111 WELESFGIFLNIP----PGALKQSVEIQCVRHSPTVFP 144
>SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 277 FLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPG-VAPHDKKA 453
+L LP EI+PA R+ T R +GR S + RT G +A ++
Sbjct: 165 YLMLPLEIIPAVKSEHCRSATKRGRLIGRSKKSVCSPLPAFVFNRTEHGLGRLADAERGG 224
Query: 454 DVGPGSADLEFKGGYGRGSL 513
D G E +GG GSL
Sbjct: 225 DSLKGGGRDE-EGGNCGGSL 243
>SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017)
Length = 456
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 223 LEALLLVPNQWGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RGPVGRPDAPARSAEDR 396
+EAL P Q L L LPP I+P+ V E + P+ +P P R++ R
Sbjct: 38 VEALTNAPPQTPSAKLLKGLPLPPRIIPSNTSERVLDEPIPEINFPILKPSQPTRNSHVR 97
>SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 277 FLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPG-VAPHDKKA 453
+L LP EI+PA R+ T R +GR S + RT G +A ++
Sbjct: 65 YLMLPLEIIPAVKSEHCRSATKRGRLIGRSKKSVCSPLPAFVFNRTEHGLGRLADAERGG 124
Query: 454 DVGPGSADLEFKGGYGRGSL 513
D G E +GG GSL
Sbjct: 125 DSLKGGGRDE-EGGNCGGSL 143
>SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)
Length = 1064
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 223 LEALLLVPNQWGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RGPVGRPDAPARSAEDR 396
+EAL P Q L L LPP I+P+ V E + P+ +P P R++ R
Sbjct: 38 VEALTNAPPQTPSAKLLKGLPLPPRIIPSNTSERVLDEPIPEINFPILKPSQPTRNSHVR 97
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 346 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 465
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +1
Query: 283 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 429
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 346 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 465
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 65 VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 160
+A +++L K + + APK +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 211 RTVCLEALLLVPNQWGIEYLRIFLHLPPEIV 303
R VCL +LVP++ + YL F+ +P +V
Sbjct: 454 RVVCLNTFILVPSR--VVYLNTFILVPSHVV 482
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 358 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 471
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,683
Number of Sequences: 59808
Number of extensions: 312998
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -