Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11017X
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 102 1e-22
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.95
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.9
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.9
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.7
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.7
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 6.7
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical pr... 27 8.9
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 8.9
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 8.9
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 8.9
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 8.9
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 102 bits (245), Expect = 1e-22
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Frame = +2
Query: 41 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 221 AWRHFYWYLTN-GVLNT*EY 277
AWRH+YWYLT+ G+L EY
Sbjct: 61 AWRHYYWYLTDAGILYLREY 80
Score = 45.6 bits (103), Expect = 2e-05
Identities = 33/85 (38%), Positives = 42/85 (49%)
Frame = +1
Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVA 435
GI YLR +L LP EIVPAT+K R V P A DR AYR
Sbjct: 73 GILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDREAYRT-------- 123
Query: 436 PHDKKADVGPGSADLEFKGGYGRGS 510
+K + GPG A + ++ G+GRG+
Sbjct: 124 --EKVTEAGPGGAPV-YRAGFGRGA 145
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 349 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 438
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +1
Query: 349 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 507
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +1
Query: 349 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 507
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 361 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 483
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 361 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 489
+ D+ + S++D + ++TPA P KKA+ S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 484 IQDQLSLDQHQPFYHEVQHQGQQE 413
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 349 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 477
G +P A ++ A+D SAY+RT H +K + PG +D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 349 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 471
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 346 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 474
+GP G+P P + A R PA AP A PG A
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQA 194
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 304 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 447
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 304 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 447
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 337 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 423
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 352 PVGRPDAPARSAEDRSAY--RRTPAAPGVAP--HDKKADVGPGSADLEFKGGYGRGS 510
P RP + S S++ R+ P+ PG AP H + PG + + + YG S
Sbjct: 203 PTDRPRSRNGSPVVGSSFSSRKEPSTPGSAPVPHTRHGSSTPGHGNHQLQNNYGGAS 259
>Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical
protein T16G12.3 protein.
Length = 193
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 346 RGPVG--RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGSLLH 519
R P G +P P + S+ + A P +PH+++ D S+ + G GS H
Sbjct: 4 RPPFGIVKPSKPTGNPSSGSSDLDSTAEP--SPHERRMDSQRASSGSDVHGHPSLGSQSH 61
Query: 520 NLSNKKT 540
NL++ ++
Sbjct: 62 NLTSAQS 68
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 286 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 456
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 457 VGPGSADLEFK 489
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 286 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 456
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 457 VGPGSADLEFK 489
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 286 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 456
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 457 VGPGSADLEFK 489
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 286 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 456
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 457 VGPGSADLEFK 489
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,115
Number of Sequences: 27780
Number of extensions: 239920
Number of successful extensions: 880
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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