Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11017X
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   101   4e-22
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    96   1e-20
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...    93   1e-19
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.6  
At5g36210.1 68418.m04365 expressed protein                             27   6.2  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   8.3  
At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,...    27   8.3  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  101 bits (241), Expect = 4e-22
 Identities = 42/71 (59%), Positives = 56/71 (78%)
 Frame = +2

Query: 41  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 221 AWRHFYWYLTN 253
           AW H+YW+LTN
Sbjct: 61  AWMHYYWFLTN 71



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +1

Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTP 417
           GI++LR +L+LP EIVPATLK+  +      G  G RP  P R        DR  YR  P
Sbjct: 73  GIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGP 132

Query: 418 AAPGVAPHDKKADVGPGSADLEFKGGYG 501
            + G   +  KA   P      F+GG G
Sbjct: 133 KSGG--EYGDKAG-APADYQPGFRGGAG 157


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 42/71 (59%), Positives = 55/71 (77%)
 Frame = +2

Query: 41  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 221 AWRHFYWYLTN 253
           AW H+YW+LTN
Sbjct: 60  AWMHYYWFLTN 70



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +1

Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAP 426
           GIE+LR +L+LP ++VPATLK+S +       GP G R   P RS  DR  +  R     
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRG 131

Query: 427 GVAPHDKKADVGPGSADLEFKGGYGR 504
           G    D+K    P      F+GG GR
Sbjct: 132 GPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 41/71 (57%), Positives = 54/71 (76%)
 Frame = +2

Query: 41  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 221 AWRHFYWYLTN 253
           AW H+YW+LTN
Sbjct: 60  AWMHYYWFLTN 70



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
 Frame = +1

Query: 256 GIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRR 411
           GIE+LR +L+LP ++VPATLK+S +       GP G R   P           DR  YR 
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRA 131

Query: 412 TPAAPGVAPHDKKADVGPGSADLEFKG---GYGRGS 510
            P A G    +K     P      F+G   G+GRG+
Sbjct: 132 GPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRGA 165


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 128 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 217
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 38  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 136
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 133 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 47
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


>At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 728

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +2

Query: 86  FKEGVMVAKKDYHA-PKHTELEKIPNLQVIKAMQSL-KSRGYVKEQFAWRHFYWYLTNGV 259
           +KEG +VAKK      K T      N  +   M ++ K + ++  Q   RH+  Y   G 
Sbjct: 607 WKEGSLVAKKQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGRHWPAYTARGK 666

Query: 260 LNT*EYSCTFLLKLCLQHLSAQYVQRQYAV 349
                Y+ TF  K CL +   +  QR Y V
Sbjct: 667 CERCSYAGTFTEKKCLSN-CGEASQRWYHV 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,849
Number of Sequences: 28952
Number of extensions: 213129
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)