Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11014
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    30   1.4  
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    30   1.4  
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    30   1.4  
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    30   1.4  
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    30   1.4  
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    30   1.4  
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    30   1.4  

>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238 NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
           NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 512 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 559


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 238  NSGRKQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSL 384
            NS    AAAA A+     A S VS L+  + + P P     HHP S++L
Sbjct: 1344 NSSAAAAAAAAAHRAASPASS-VSSLSRQSPLHPVPQSPLSHHPSSSAL 1391


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,303,521
Number of Sequences: 53049
Number of extensions: 402171
Number of successful extensions: 1084
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)