Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11014
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   5.0  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   6.5  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   6.5  
At2g36630.1 68415.m04492 expressed protein  contains Pfam profil...    27   6.5  
At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    27   8.7  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    27   8.7  

>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 112 KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 210
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 407 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 303
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 206 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 60
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At2g36630.1 68415.m04492 expressed protein  contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 459

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 179 GTGGLLTPLVAPVLGFSSAGIAAGSKPLL 265
           G GG+  P++  +LGF +   AA SK ++
Sbjct: 80  GGGGIFVPMLTLILGFDTKSAAAISKCMI 108


>At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat; identical to cDNA membrane-associated
           salt-inducible protein like GI:2632060
          Length = 412

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = -2

Query: 271 LVQQRLASCRYSR*AETEHGSH*WSQQTPSAIYYSTADRVYH*CS*KPHVPLIFVLFERY 92
           L  +RLA CR     ET   SH    +     +YST  R Y   S   H    F   ++Y
Sbjct: 72  LTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQY 131

Query: 91  AGIKATMLIKEV*STTLQHKN 29
              ++ +    + +  L  KN
Sbjct: 132 GTPRSAVSFNALLNACLHSKN 152


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 261 SGLLPAAIPAELKPSTGATNGVNRPPV 181
           +G  PA++    KPS    NGV + PV
Sbjct: 603 AGSFPASVSTMAKPSVSLQNGVEKLPV 629


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 261 SGLLPAAIPAELKPSTGATNGVNRPPV 181
           +G  PA++    KPS    NGV + PV
Sbjct: 603 AGSFPASVSTMAKPSVSLQNGVEKLPV 629


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,575,945
Number of Sequences: 28952
Number of extensions: 179333
Number of successful extensions: 434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)