Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11012
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    63   4e-11
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    27   3.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.0  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.6  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   8.7  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   8.7  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +3

Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
           AT+GV+G+G GIG +F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 13  ATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 436 AKSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMREPKTVPIPAPEPATPTV 257
           ++++ + ++    P A++    R+AY N      G L+        T PIP   P+TP  
Sbjct: 83  SRNNVSPVLTDLPPYAAEHPFSRLAYFNPAFNSPGILS----ASGLTSPIPESRPSTPMD 138

Query: 256 AHQHQ 242
            HQ +
Sbjct: 139 NHQER 143


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 625 LHN*INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLSTQIVYTETSYVG 476
           L++ +NC+        +T    +H  G  SK S+ WL+T+ +  E    G
Sbjct: 352 LNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAG 401


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 592 AHCRCNTHQSLHHYEGEVSKHSIPWLST 509
           A  R NT Q    Y G    HS PW S+
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASS 173


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 251 VRDSGSSWFRSWYW 292
           V D G SWFR+ YW
Sbjct: 419 VLDCGMSWFRNEYW 432


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 48  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 161
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 122 HLQQYPPIHRWYLLSLHSSLQC 187
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 613 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 509
           I C+  +     N H + HH   + +  SIP  +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,500
Number of Sequences: 5004
Number of extensions: 66756
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)