Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11012
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.56
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 32 0.56
03_06_0422 + 33818887-33819996 31 0.98
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.7
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 3.9
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.9
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 3.9
02_01_0775 + 5775949-5777385 29 3.9
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.9
09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779 28 6.9
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 6.9
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.9
01_05_0490 + 22672241-22674679 28 6.9
10_08_0777 + 20489528-20490649 28 9.1
08_02_1172 + 24898290-24899141,24900864-24901328 28 9.1
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760... 28 9.1
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 54 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 182
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/84 (27%), Positives = 32/84 (38%)
Frame = -2
Query: 304 PKTVPIPAPEPATPTVAHQHQ*IWQQSQCP**PMWSGRTALQRAV*GQQVPSVYGWVLLQ 125
P T P P P P Q +Q Q ++ + ALQ + +P Y L+
Sbjct: 989 PPTPQQPLPPPPPPPSLQQLHHPYQHQQQQQQQLYHHQNALQPQIPSNSIPQAY----LR 1044
Query: 124 VVAPVQSCRRWQTWLQGRSVWRQT 53
P+Q Q LQ W+QT
Sbjct: 1045 TQQPLQQLPLMQQQLQPAQAWQQT 1068
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 440 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 270
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 54 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 155
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 231 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 61
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 54 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 164
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 56 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 229
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 230 LPNS 241
+PN+
Sbjct: 239 MPNA 242
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -3
Query: 141 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPR 4
GG +W Q RV G GC G + CGA P+
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQ 392
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 449 NSLESEEQQERHHKTEQTHSLRQ 381
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
Length = 106
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 319 PMMREPKTVPIPAPEPATP 263
P ++E KT+P+PAP A P
Sbjct: 84 PQVKEKKTLPLPAPAAAPP 102
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -1
Query: 488 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 309
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 308 GAEDCSNTS 282
GAE S+ +
Sbjct: 391 GAESVSSNA 399
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 208 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 62
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 247 AGARQWE*LVPELVLEQSSAPSSSAMPGTPP 339
A +R+W + E+VLEQ S + MP PP
Sbjct: 312 ARSRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>10_08_0777 + 20489528-20490649
Length = 373
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 171 TALCSAVLPDHIGH*GH*LCC-QIHWCWCATVGVAGSGA-GIGTVFGSLIIGYARNPSLK 344
TALC +V G +C ++ + T G+ G+ IGT SL G A + ++K
Sbjct: 85 TALCESVPASTCS--GDGVCSYEVETMFGDTSGIGGTDTFAIGTATASLAFGCAMDSNIK 142
Query: 345 QQLFSYAILG 374
Q L + ++G
Sbjct: 143 QLLGASGVVG 152
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 232
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 233 P 235
P
Sbjct: 100 P 100
>02_03_0053 -
14475106-14475126,14475171-14475512,14475969-14476099,
14476198-14477230,14477495-14477702,14477761-14477807,
14477906-14477971,14478644-14478804,14478985-14479118,
14479244-14479452
Length = 783
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 194 SRPHRSLRTLTLLPNSLVLVRDSGSSWFRSWYWNSLRL 307
S+P + + L +V V SG FRSW+ N++ L
Sbjct: 176 SKPEKQKKIQAELYQGVVDVLSSGEKRFRSWFLNAMAL 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,472,915
Number of Sequences: 37544
Number of extensions: 505475
Number of successful extensions: 2120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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