Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11012
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 9e-19
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.7
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 3.0
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 5.3
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 5.3
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 5.3
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 5.3
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 7.0
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7) 28 9.3
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 9.3
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 91.1 bits (216), Expect = 9e-19
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +3
Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
ATVG AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 111 ATVGAAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFIGAGA 255
+A +RP + +VPA P + A R FQT+S +D+DSAAKFIGAGA
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGA 110
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 240 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 136
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 470 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 363
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 201 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 109
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 201 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 52
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 110 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 223
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 42 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 200
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 123 TCSSTHPYTDGTCCPYTALCSAV 191
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 249 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 73
ST E +R+ ++S D+C + CR+ C+ S + MG C + + + ++A P C G
Sbjct: 8 STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 123 TCSSTHPYTDGTCCPYTALCSAV 191
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 180 RELCRDSRYHLCMGGYCCKWSHQCR 106
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 676
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 397 VCSVL*WRSCCSSLSKLFTFKNTTTAILHMRFQCILSEWTAM 522
VC+ + W++ SL+K L +FQC +SEW ++
Sbjct: 337 VCAGV-WKTGTKSLTKALRILGYRVYDLDEQFQCFMSEWESL 377
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +2
Query: 263 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 343
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = -3
Query: 183 CRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 61
C C Y C+ G C KW C + EDG PG G Q G
Sbjct: 1189 CDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 440 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 300
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 458 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 366
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,718,302
Number of Sequences: 59808
Number of extensions: 590017
Number of successful extensions: 1960
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1951
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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