Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11012
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 89 3e-18
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 89 3e-18
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 89 3e-18
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 29 2.7
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 29 2.7
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 4.7
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 4.7
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical ... 29 4.7
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 4.7
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 8.1
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
ATVGVAGSGAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 31 ATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 75
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 181 AVRSFQTTSVTKDIDSAAKFIGAGA 255
A R TT KDIDSAAK+IGAGA
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGA 30
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
ATVGVAGSGAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 31 ATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 75
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 181 AVRSFQTTSVTKDIDSAAKFIGAGA 255
A R TT KDIDSAAK+IGAGA
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGA 30
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
ATVGVAGSGAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 55 ATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 99
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 181 AVRSFQTTSVTKDIDSAAKFIGAGA 255
A R TT KDIDSAAK+IGAGA
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGA 54
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 304 PKTVPIPAPEPATPTVAHQ 248
PK +P+PAP PA P + HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 304 PKTVPIPAPEPATPTVAHQ 248
PK +P+PAP PA P + HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 304 PKTVPIPAPEPATPTVAHQ 248
PK +P+PAP PA P + HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 304 PKTVPIPAPEPATPTVAHQ 248
PK +P+PAP PA P + HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 108 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 197
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 48 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 173
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 153 HLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRT 10
++C G CC ++ + G P G S G Q F + G R QR+
Sbjct: 103 YICSNGACCPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRS 150
>AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical
protein Y68A4A.9 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 246 CWCATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 377
CWC + + S GI + I GY P LF Y + F
Sbjct: 57 CWCICLDITFSFLGIPYILLPAIAGYGLGPIESPGLFFYLAVTF 100
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 433 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 305
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 601 PVDAHCRCNTHQSLHHYEGEV 539
P+ CRCNT +LH EG V
Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 228 RVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 109
RV ++ C P CR +LC SRY M YC K C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,922,460
Number of Sequences: 27780
Number of extensions: 413447
Number of successful extensions: 1655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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