Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11012
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    60   2e-09
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   7.6  
At3g13080.4 68416.m01638 ABC transporter family protein almost i...    28   7.6  
At3g13080.3 68416.m01637 ABC transporter family protein almost i...    28   7.6  
At3g13080.2 68416.m01636 ABC transporter family protein almost i...    28   7.6  
At3g13080.1 68416.m01635 ABC transporter family protein almost i...    28   7.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.6  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/45 (64%), Positives = 33/45 (73%)
 Frame = +3

Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
           AT+  AG+  GIG VF SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 24  ATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 35  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 145
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g13080.4 68416.m01638 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1120

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 368 NGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRAPAPMNLAAESMSLVTDV 201
           NGV E+ LL GG   +  D+  E      SG +  + RA     L    MS + D+
Sbjct: 211 NGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLIDI 266


>At3g13080.3 68416.m01637 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1120

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 368 NGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRAPAPMNLAAESMSLVTDV 201
           NGV E+ LL GG   +  D+  E      SG +  + RA     L    MS + D+
Sbjct: 211 NGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLIDI 266


>At3g13080.2 68416.m01636 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1489

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 368 NGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRAPAPMNLAAESMSLVTDV 201
           NGV E+ LL GG   +  D+  E      SG +  + RA     L    MS + D+
Sbjct: 211 NGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLIDI 266


>At3g13080.1 68416.m01635 ABC transporter family protein almost
           identical to MRP-like ABC transporter GI:2316016 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00005
           ABC transporter
          Length = 1514

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 368 NGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRAPAPMNLAAESMSLVTDV 201
           NGV E+ LL GG   +  D+  E      SG +  + RA     L    MS + D+
Sbjct: 211 NGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLIDI 266


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 239  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 111
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,651
Number of Sequences: 28952
Number of extensions: 371971
Number of successful extensions: 1269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)