Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11008
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 135 6e-33
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 111 6e-26
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 105 4e-24
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 98 8e-22
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 93 2e-20
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 80 2e-16
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 71 1e-13
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 41 2e-04
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 2.2
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.0
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.2
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 135 bits (326), Expect = 6e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
GKSIYG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+HVVFG V E
Sbjct: 73 GKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTE 132
Query: 181 GMEVVKQIETFGSQSGKTSKRIVI 252
GM+VVK++E+ GS SG T RIVI
Sbjct: 133 GMDVVKKVESLGSNSGATRARIVI 156
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 111 bits (268), Expect = 6e-26
Identities = 49/68 (72%), Positives = 57/68 (83%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
GKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG V+
Sbjct: 98 GKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLS 157
Query: 181 GMEVVKQI 204
G ++VK+I
Sbjct: 158 GYDIVKKI 165
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 105 bits (253), Expect = 4e-24
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
G+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T LDG+HVVFG V++
Sbjct: 78 GESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQ 137
Query: 181 GMEVVKQIETFGSQSGKTSKRIVIK 255
G V+ IE +++ +VI+
Sbjct: 138 GKSTVRTIENLETKNDDPVVPVVIE 162
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 98.3 bits (234), Expect = 8e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +1
Query: 25 FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 204
F DENFTLKH PG+LSMANAG D+NG QFFITTV +LDG+HVVFG V+EG ++VK+I
Sbjct: 91 FPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEI 150
Query: 205 ET 210
E+
Sbjct: 151 ES 152
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 GKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 177
G SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV
Sbjct: 64 GTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVV 123
Query: 178 EGMEVVKQI 204
G+ V K++
Sbjct: 124 SGLSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 80.2 bits (189), Expect = 2e-16
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 GKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 177
G+SI+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F
Sbjct: 517 GESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAY 576
Query: 178 EGMEVVKQIE 207
G++VV +IE
Sbjct: 577 AGLDVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 177
G+SI+G F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG VV
Sbjct: 338 GQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVV 397
Query: 178 EGMEVVKQIETFGSQSGKTSK 240
G+ V+ +E + S K
Sbjct: 398 GGLNVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 GKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 177
G+SIYG F E L+ G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 75 GESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 230 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 144
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 102 WFPVLHHHC 128
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 197 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 48
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -1
Query: 215 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 36
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 35 SSSNL 21
SSS++
Sbjct: 222 SSSSI 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,329
Number of Sequences: 5004
Number of extensions: 46983
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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