Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11008
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 142 2e-34
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 5e-25
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 91 9e-19
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 6e-17
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 3e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 81 7e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 9e-15
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 72 4e-13
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.44
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.58
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 31 0.77
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.3
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 7.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 142 bits (345), Expect = 2e-34
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
GKSIYG KFEDENF LKHTG GVLSMAN+G +TNGSQFF+TT KT WLDG+HVVFGNV+E
Sbjct: 208 GKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIE 267
Query: 181 GMEVVKQIETFGSQSGKTSKRIVI 252
G +VV+++E GSQSGK SK++VI
Sbjct: 268 GFDVVRKMEAVGSQSGKASKKVVI 291
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 142 bits (344), Expect = 2e-34
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
GKSIYG KF DENF LKHTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +
Sbjct: 74 GKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKD 133
Query: 181 GMEVVKQIETFGSQSGKTSKRIVI 252
GM+VVK+IE GS SGKTSK++VI
Sbjct: 134 GMDVVKKIEKVGSDSGKTSKKVVI 157
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 113 bits (272), Expect = 1e-25
Identities = 52/64 (81%), Positives = 55/64 (85%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
GKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG V++
Sbjct: 116 GKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLK 175
Query: 181 GMEV 192
GMEV
Sbjct: 176 GMEV 179
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 111 bits (267), Expect = 5e-25
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
G SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG V+E
Sbjct: 97 GYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLE 156
Query: 181 GMEVVKQIE 207
GM+VV++IE
Sbjct: 157 GMDVVRRIE 165
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 90.6 bits (215), Expect = 9e-19
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 GKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 177
G+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VFG VV
Sbjct: 6 GESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVV 65
Query: 178 EGMEVVKQI 204
+GM+V +QI
Sbjct: 66 KGMDVAQQI 74
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/59 (64%), Positives = 46/59 (77%)
Frame = +1
Query: 76 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVI 252
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E + K +I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMI 59
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +1
Query: 49 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 207
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 81.0 bits (191), Expect = 7e-16
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
G+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG V+E
Sbjct: 49 GESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIE 108
Query: 181 GMEVVKQIE 207
G+ V+ +E
Sbjct: 109 GLNVLDVLE 117
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 9e-15
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +1
Query: 67 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 204
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 71.7 bits (168), Expect = 4e-13
Identities = 38/70 (54%), Positives = 47/70 (67%)
Frame = +1
Query: 1 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 180
G+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG+V++
Sbjct: 29 GESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQ 78
Query: 181 GMEVVKQIET 210
G E+V+QIE+
Sbjct: 79 GEELVRQIES 88
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 52 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 168
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 52 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 204
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 154 HVVFGNVVEGMEVVKQIET 210
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 194 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 57
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 167 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 57
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 197 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 57
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -3
Query: 228 PRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARS 58
PR A +GL D F+ K+ MS I+PGG D +EE T S G + E A+S
Sbjct: 443 PRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNGDASDEKAQS 496
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -1
Query: 170 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 57
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 170 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 57
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 215 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 36
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 35 SS 30
+S
Sbjct: 145 TS 146
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 473 CIFAITFLFLLVASCLFRPK*FTLS*TFIYINYY 574
CI ++ ++++ C+ R F L+ T +Y YY
Sbjct: 80 CIISLVLIYVMCTLCIKRCPEFALTVTSLYFRYY 113
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 227 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 57
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 218 LPKVSICL-TTSMPSTTFPKTTCLPSSQEVLTV-VMKNWEPLVSAPALAMERTPGP 57
+P+ ++ L TT+ P TT P T + S + +V M + S +A E T P
Sbjct: 1626 VPETTLALETTTAPETTLPPETTMASESTLASVTTMAPESTVASVTTMAPESTLAP 1681
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,168
Number of Sequences: 59808
Number of extensions: 334862
Number of successful extensions: 965
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -