Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11007
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   111   3e-26
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   111   3e-26
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   2.9  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   3.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   6.6  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  111 bits (268), Expect = 3e-26
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +3

Query: 45  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 225 ERERRDNYVPK 257
           ERER+D YVP+
Sbjct: 77  ERERKDQYVPE 87



 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = +2

Query: 242 QLCPKVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 370
           Q  P+VS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 83  QYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  111 bits (268), Expect = 3e-26
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +3

Query: 45  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 225 ERERRDNYVPK 257
           ERER+D YVP+
Sbjct: 77  ERERKDQYVPE 87



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 242 QLCPKVSALEHDIIEVDPDTKDMLKMLDFNNI 337
           Q  P+VS LE D I VD DTKDMLK L +++I
Sbjct: 83  QYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 133 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 23
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 171 RRLRHSQVRGISIKLQEEERERRDNYVPKCLLSNMTS 281
           R+   S+ R  S KL EEER+RR  +V + L + +TS
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQ-LANRLTS 253


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 186 SQVRGISIKLQEEERERR 239
           S V  ISIK QEEER+R+
Sbjct: 351 SHVDSISIKAQEEERKRQ 368


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 151 PAILFLRGLVGMIAISSHILLFVSK 77
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 105 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 197
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,609
Number of Sequences: 5004
Number of extensions: 28132
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)