Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11007
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0174 + 13815478-13815903                                        111   2e-25
03_01_0066 - 537729-538163                                            111   2e-25
12_01_0898 - 8685389-8685587,8685784-8685858,8687589-8687760,868...    27   4.9  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    27   8.5  
03_06_0659 - 35345095-35345135,35345982-35347365                       27   8.5  

>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  111 bits (267), Expect = 2e-25
 Identities = 48/71 (67%), Positives = 63/71 (88%)
 Frame = +3

Query: 45  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 225 ERERRDNYVPK 257
           ERERR ++VP+
Sbjct: 77  ERERRMDFVPE 87


>03_01_0066 - 537729-538163
          Length = 144

 Score =  111 bits (267), Expect = 2e-25
 Identities = 48/70 (68%), Positives = 63/70 (90%)
 Frame = +3

Query: 45  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 225 ERERRDNYVP 254
           ERERR ++VP
Sbjct: 77  ERERRMDFVP 86



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 251 PKVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 361
           P  SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 86  PDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>12_01_0898 -
           8685389-8685587,8685784-8685858,8687589-8687760,
           8687854-8687974
          Length = 188

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 345 RPLILLKSSIFNISLVSGSTSMMSCSRADTLGHSCHASH 229
           +PLI L +S  + S   GS ++  CS A  + H+  + H
Sbjct: 18  QPLISLLTSPPSASTAPGSGNLRGCSSASNIRHASSSGH 56


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 DTKDMLKMLDFNNINGLQLTQPATQ 370
           DTKDMLK +D+  + G  +T   +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621


>03_06_0659 - 35345095-35345135,35345982-35347365
          Length = 474

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 343 PATNTASYPGWLW 381
           PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,106
Number of Sequences: 37544
Number of extensions: 170490
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)