Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11007
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   8.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 297 SGSTSMMSCSRADTLGHSCHA-SHAP 223
           S S+S  S S+ DT  HSCH+ S AP
Sbjct: 219 SSSSSSSSSSQEDTTSHSCHSPSQAP 244


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 54  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 143
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 102 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 251
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL 505


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 76  ILIQIKEYVKKSLSFLPSLLGIKLLDL 156
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,285
Number of Sequences: 59808
Number of extensions: 196569
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)