Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11007
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 119 8e-28
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 2.5
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 2.5
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 28 3.3
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 3.3
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 27 4.3
Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 27 7.5
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 27 7.5
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 119 bits (287), Expect = 8e-28
Identities = 53/71 (74%), Positives = 62/71 (87%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 225 ERERRDNYVPK 257
ERERRDNY+P+
Sbjct: 77 ERERRDNYMPE 87
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 123 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 239
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 123 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 239
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 149 WICHTFNEASQTLASARNLYQTSGRGA 229
W CH FN A ++ A+ L Q A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 78 FDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPK 257
F NK+ CE +A++ K L H+ + R + L + + ER D + +
Sbjct: 409 FCPNKKNCENVAVLIAKTL-------PAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQ 461
Query: 258 CLLSNM 275
C+LS +
Sbjct: 462 CILSGV 467
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQSVC 264
SL GI++ L G S+T RKCEE L +F V+G+T S +C
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITP-STKLC 683
>Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical
protein T07G12.10 protein.
Length = 584
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 84 TNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERE--RRDNYVPK 257
+ KR E + + T NK+ F+T + +++ + ++ L E+ E D+ K
Sbjct: 60 SEKRTIEPVVSLSTTLATNKLPRFSTPAVGHSKYNSAKNFTLNLAEKLSEILSDDDKTDK 119
Query: 258 CLLSNMTS 281
CL ++ S
Sbjct: 120 CLENSYQS 127
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 299 TKDMLKMLDFNNINGLQL 352
T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 196 EESLSNFRKRSVRGVTTMSQSVC 264
E++L+NF KR +G+ M SVC
Sbjct: 444 EKTLNNFEKRFDQGIIIMGCSVC 466
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 196 EESLSNFRKRSVRGVTTMSQSVC 264
E++L+NF KR +G+ M SVC
Sbjct: 444 EKTLNNFEKRFDQGIIIMGCSVC 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,298,952
Number of Sequences: 27780
Number of extensions: 153078
Number of successful extensions: 387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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