Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11007
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 112 8e-26
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 112 8e-26
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 112 8e-26
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 112 8e-26
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 112 8e-26
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.3
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.3
At4g04340.3 68417.m00621 early-responsive to dehydration protein... 27 4.1
At4g04340.2 68417.m00620 early-responsive to dehydration protein... 27 4.1
At4g04340.1 68417.m00619 early-responsive to dehydration protein... 27 4.1
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 27 5.4
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 27 5.4
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.1
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 27 7.1
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 27 7.1
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 27 7.1
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi... 27 7.1
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 112 bits (270), Expect = 8e-26
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 225 ERERRDNYVP 254
ERERR ++VP
Sbjct: 77 ERERRMDFVP 86
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 112 bits (270), Expect = 8e-26
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 225 ERERRDNYVP 254
ERERR ++VP
Sbjct: 77 ERERRMDFVP 86
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 112 bits (270), Expect = 8e-26
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 225 ERERRDNYVP 254
ERERR ++VP
Sbjct: 77 ERERRMDFVP 86
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 112 bits (270), Expect = 8e-26
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 225 ERERRDNYVP 254
ERERR ++VP
Sbjct: 77 ERERRMDFVP 86
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 112 bits (270), Expect = 8e-26
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 45 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 224
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 225 ERERRDNYVP 254
ERERR ++VP
Sbjct: 77 ERERRMDFVP 86
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 66 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 239
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 66 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 239
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At4g04340.3 68417.m00621 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 LC-PKVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 367
LC KV A+EH I EVD +K++ + + N +N + PA+
Sbjct: 284 LCGQKVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPAS 324
>At4g04340.2 68417.m00620 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 LC-PKVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 367
LC KV A+EH I EVD +K++ + + N +N + PA+
Sbjct: 284 LCGQKVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPAS 324
>At4g04340.1 68417.m00619 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 LC-PKVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 367
LC KV A+EH I EVD +K++ + + N +N + PA+
Sbjct: 284 LCGQKVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPAS 324
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 360 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADT 256
GC R +K+ +F+ LVS + S+++C ++T
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNT 176
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 360 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADT 256
GC R +K+ +F+ LVS + S+++C ++T
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNT 176
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 58 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 150
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 260 TLWDIVVTPLTLLFLKFDRDSSHLRVS 180
++W PLT+L+ F RD + R S
Sbjct: 305 SIWHAATIPLTILWWSFIRDDAEFRTS 331
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 260 TLWDIVVTPLTLLFLKFDRDSSHLRVS 180
++W PLT+L+ F RD + R S
Sbjct: 305 SIWHAATIPLTILWWSFIRDDAEFRTS 331
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 260 TLWDIVVTPLTLLFLKFDRDSSHLRVS 180
++W PLT+L+ F RD + R S
Sbjct: 305 SIWHAATIPLTILWWSFIRDDAEFRTS 331
>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 736
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 207 IKLQEEERERRDNYVPKCLLSNMTSSK 287
++ Q +E E R+NY+ KC N T +
Sbjct: 433 LEAQRKEYEDRENYLDKCQAKNKTERR 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,805,054
Number of Sequences: 28952
Number of extensions: 140683
Number of successful extensions: 413
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -