Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11006
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    31   0.13 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   4.8  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    25   8.4  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 702 LKINYKIVKKLITSHLEADARKQNKRNDLV--RFDLFLSPRSSSLRDTVYFLTLALPKLY 529
           L + YK  K  I  +  +D  +++  +DLV   F +F SP     R TV  L  +  +  
Sbjct: 646 LALGYKYFKNYIPENQVSDLSRESIESDLVFAGFLIFTSPLKEDARQTVQMLNNSSHRCM 705

Query: 528 FLSSRNDLSRV 496
            ++  N L+ V
Sbjct: 706 MITGDNPLTAV 716


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 547 ESEKIDSVPQTTRP 588
           ESE + +VPQTTRP
Sbjct: 2   ESESVPTVPQTTRP 15


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 370 FYCVHIDEKYANVVKIKHEFK 432
           FYC+ +D K +N+V  K  F+
Sbjct: 292 FYCIPLDFKESNIVLKKESFR 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,490
Number of Sequences: 5004
Number of extensions: 53866
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)