Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11006
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122     31   0.71 
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    28   8.8  
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289...    28   8.8  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   8.8  

>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
          Length = 294

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 451 SYSVIYF*IRVLFLLHLHIFHQYGHNKNTSDDGIPAPSW*KDRTNGS 311
           +YS+++   R+L L+       +   KN  D G+P P+W   RT GS
Sbjct: 156 TYSIVWNPKRILILVDGKAIRDF---KNNEDQGVPFPTWQSMRTFGS 199


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 84  YYVCVSILVCIVCKYVYWYILYY 16
           YYV  S+L  ++  ++YW++L Y
Sbjct: 262 YYVFNSLLFSLLVLHIYWWVLIY 284


>02_04_0370 -
           22427559-22427590,22427783-22427964,22428754-22428939,
           22429125-22429280,22429366-22429589,22430933-22430968,
           22431390-22431539
          Length = 321

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 84  YYVCVSILVCIVCKYVYWYILYY 16
           YYV  S+L  ++  ++YW++L Y
Sbjct: 271 YYVFNSLLFSLLVLHIYWWVLIY 293


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 234 PGGSIVECSAGCSEKCSNFKLF*NN 160
           P   + +C A C E C N +++ +N
Sbjct: 423 PAAKVKQCDANCDETCDNARIYISN 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,326,093
Number of Sequences: 37544
Number of extensions: 314984
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)