Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11006
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052149-1|AAK93573.1|  178|Drosophila melanogaster SD10877p pro...    31   1.6  
AE014134-1430|AAF52620.1|  178|Drosophila melanogaster CG8372-PA...    31   1.6  
AE014134-1429|AAN11157.1|  196|Drosophila melanogaster CG8372-PB...    31   1.6  

>AY052149-1|AAK93573.1|  178|Drosophila melanogaster SD10877p
           protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   TGLHNIIYTNIHTYIQYILIYLHTHNKSTVWKL*MIMM 119
           T +HNI   N H+++   LIY+  ++ ST W + ++ M
Sbjct: 107 TRIHNIFCDNCHSHVATALIYMRYYD-STAWNMIILSM 143


>AE014134-1430|AAF52620.1|  178|Drosophila melanogaster CG8372-PA,
           isoform A protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   TGLHNIIYTNIHTYIQYILIYLHTHNKSTVWKL*MIMM 119
           T +HNI   N H+++   LIY+  ++ ST W + ++ M
Sbjct: 107 TRIHNIFCDNCHSHVATALIYMRYYD-STAWNMIILSM 143


>AE014134-1429|AAN11157.1|  196|Drosophila melanogaster CG8372-PB,
           isoform B protein.
          Length = 196

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   TGLHNIIYTNIHTYIQYILIYLHTHNKSTVWKL*MIMM 119
           T +HNI   N H+++   LIY+  ++ ST W + ++ M
Sbjct: 125 TRIHNIFCDNCHSHVATALIYMRYYD-STAWNMIILSM 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,194,952
Number of Sequences: 53049
Number of extensions: 577410
Number of successful extensions: 1323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)