Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11006
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical...    29   3.4  
AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical...    28   7.8  
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical
           protein Y57A10A.23 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 543 LPKLYFLSSRNDLSRVTRLKKFHFKNMTFYF 451
           +P+L FL    DL +  + KK  +KN  +Y+
Sbjct: 114 IPRLLFLDKNGDLLQEFKNKKAEYKNYAYYY 144


>AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical
           protein Y54G11A.12 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 81  YVC---VSILVCIVCKYVYWYILYYVNQSL 1
           Y C   +S+LVC  C +V W++L   N S+
Sbjct: 206 YTCCFILSVLVCFYCLHVLWHLLPRNNPSM 235


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 84  YYVCVSILVCIVCKYVYWYILY-YVNQ 7
           +++ +S LVCI+C Y+  +  Y YVN+
Sbjct: 22  HFLWISTLVCILCCYIVLFPFYVYVNK 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,986
Number of Sequences: 27780
Number of extensions: 309930
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)