Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11006
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60160.1 68414.m06777 potassium transporter family protein si...    30   1.4  
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    30   1.4  
At1g32030.1 68414.m03940 expressed protein contains Pfam profile...    28   5.6  
At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger) fa...    28   7.3  
At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger) fa...    28   7.3  
At4g02900.1 68417.m00392 early-responsive to dehydration protein...    27   9.7  
At2g35670.1 68415.m04375 transcription factor, putative / fertil...    27   9.7  
At2g31920.1 68415.m03899 expressed protein                             27   9.7  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   9.7  

>At1g60160.1 68414.m06777 potassium transporter family protein
           similar to potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 827

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 632 IRETT*FALTFSFLHGRVVCGTLSIFSLSLCLNYIFSLAVTICR 501
           +RE T   LT+   HG V     SIF   L +NY ++     CR
Sbjct: 762 LREATDSGLTYLLAHGDVRAKKNSIFVKKLVINYFYAFLRRNCR 805


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 702 LKINYKIVKKL-ITSHLEADARKQNKRN-DLVRFDLFLSPRSSSLRDTVYFL 553
           ++INY  +K + I+ HL A A+K ++RN +L      L PR    RD   +L
Sbjct: 160 IRINYDDIKMVFISCHLSAHAKKVDQRNTELRHIANSLLPRDKRKRDLTVWL 211


>At1g32030.1 68414.m03940 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313); expression
           supported by MPSS
          Length = 333

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 684 IVKKLITSHLEADARKQNKRNDLVRFDLFLSPRSSSL 574
           ++ K + S  +A  +KQ K +D   FDLF   R +S+
Sbjct: 39  LLPKKVNSRCQAKTKKQEKESDKRFFDLFPKKRRTSV 75


>At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 411

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 538 RQSESEKIDSVPQTTRPWR 594
           R+SESE++   P T  PWR
Sbjct: 288 RESESERVTMEPATVSPWR 306


>At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 411

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 538 RQSESEKIDSVPQTTRPWR 594
           R+SESE++   P T  PWR
Sbjct: 288 RESESERVTMEPATVSPWR 306


>At4g02900.1 68417.m00392 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 785

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -2

Query: 702 LKINYKIVKKLITSHLEADARKQNKRNDLVRFDLFLSPRSSSLRDTVYFLTLALPKLYF- 526
           L + YK V  +   HL A++R+ ++   LVR ++   P  S      +F  +  P  Y  
Sbjct: 174 LYMEYKAVANMRLRHLAAESRRPDQLTVLVR-NVPPDPDESVNEHVEHFFCVNHPDHYLC 232

Query: 525 ---LSSRNDLSRVTRLKKFHFKNMTFY 454
              + + NDL+++   +K     +T+Y
Sbjct: 233 HQVVYNANDLAKLVAQRKAMQNWLTYY 259


>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 669 ITSHLEADARKQNKRNDLVRFDLFLSPRSSSLRDTVYFLTLALPKLYFLSSRNDLSRVTR 490
           I+S  +A + K+N+   +   D+   PR+ S ++T   LT   P +    S   + RV+R
Sbjct: 213 ISSPPKAHSSKKNESTHMNDEDVSFPPRTRSSKETSDILTTTQPAI-VEPSEPKVRRVSR 271

Query: 489 LKKFHFK 469
            K+ + K
Sbjct: 272 RKQLYAK 278


>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 286 KLKMPVHSSSFLTIHSPSRRFDCG 215
           K K+ ++  S L I SPS+ F+CG
Sbjct: 187 KSKLVLNDKSLLKIESPSKYFNCG 210


>At1g59453.1 68414.m06679 transcription factor-related weak
           similarity to TFIIIC Box B-binding subunit [Homo
           sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 672 LITSHLEADARKQNKRNDLVRFDLFLSPRSSSLRDTVYFLTLALPKLYFLSSRN 511
           +I++ L+    + N    LV     LSP SSS++  V+   L +P+L F + +N
Sbjct: 4   IISTALDEICSQGNTGIPLVTLWSRLSPLSSSIKTHVWRNLLTIPQLQFKTKKN 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,259
Number of Sequences: 28952
Number of extensions: 268725
Number of successful extensions: 617
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)