Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11005
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   134   2e-32
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.0  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.2  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.2  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  134 bits (323), Expect = 2e-32
 Identities = 58/74 (78%), Positives = 67/74 (90%)
 Frame = +3

Query: 33  AVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 212
           AVIK  DMSE+MQQ+A+  A QA+EK  IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 213 VTHETRHFIYFYLG 254
           VTHE+RHFIYFYLG
Sbjct: 62  VTHESRHFIYFYLG 75


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 382 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 257
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 332 YCVRC*QKNRSDAKWSNRS 276
           YC+RC   ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 126 PFQCXISRALELHSQQHLAASLRSCQHSL*LLCDHTSCL 10
           P      ++L L + QH+   L SC ++L +L  H  CL
Sbjct: 32  PHSFMFVKSLHLMTSQHIFKCLSSCNYALSIL--HNICL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,338
Number of Sequences: 5004
Number of extensions: 52711
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)