Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11005
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           87   1e-17
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     77   2e-14
01_06_0783 + 31975261-31975398,31975583-31975726                       77   2e-14
01_05_0324 - 20946774-20946935,20947301-20947780                       71   7e-13
02_04_0361 - 22359278-22359439,22362291-22362728                       68   7e-12
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925...    31   0.92 

>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +3

Query: 30  KAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 203
           K  +K+ADM EEM+Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 18  MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGR 197
           +   K  IK+A+M EEM+Q+A D    A EK  +EKDI  +IK EFDK + PTWHCIVG 
Sbjct: 54  LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112

Query: 198 NFGS 209
           NFG+
Sbjct: 113 NFGT 116


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +3

Query: 18  MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIE--KDIAAFIKKEFDKKYNPTWHCIV 191
           M + KA++++ DM  +MQ  A+  A +AL++ ++   + IAA IKKEFD  + P W C+V
Sbjct: 1   MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60

Query: 192 GRNFGSYVTHETRHFIYFYLG 254
           G +FG Y TH    FIYF LG
Sbjct: 61  GASFGCYFTHSKGSFIYFKLG 81


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  ADMSEEMQQDAVDCATQA---LEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 218
           ADMS  MQ  A  CA ++   L+K +  + +A  +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183

Query: 219 HETRHFIYFYLGR 257
           H    F+YF + +
Sbjct: 184 HARGCFLYFSMDK 196


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +3

Query: 39  IKNADMSEEMQQDAVDCATQALEKXNI--EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 212
           ++ ADM   MQ+ AV  A  A+        K +A  +KKEFD  Y P WHCIVG  FGSY
Sbjct: 108 VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSY 167

Query: 213 VTHETRHFIYFYLGRWLYCSLR-AVRP 290
           VTH    F+YF + +      R AV P
Sbjct: 168 VTHSVGGFLYFSVDKVYVLLFRTAVEP 194


>03_06_0490 +
           34289904-34289967,34291912-34292237,34292401-34292536,
           34292651-34292793,34292880-34293003,34293562-34293963,
           34294121-34294176
          Length = 416

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 283 TALKEQYSHLPR*K*MKWRVSCVTYEPKLRPTMQCQV 173
           T L+ QYSH+         + C++YE K+RP+M+  V
Sbjct: 321 TRLEGQYSHVGAQTVATLALECLSYEAKMRPSMEAVV 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,202
Number of Sequences: 37544
Number of extensions: 335517
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)