Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11005
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               161   7e-40
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   2e-12
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)                    30   1.6  
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)                   30   2.2  
SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  161 bits (390), Expect = 7e-40
 Identities = 70/80 (87%), Positives = 77/80 (96%)
 Frame = +3

Query: 18  MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGR 197
           M +RKAVIKNADM+E+MQ DA++CATQALEK NIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 198 NFGSYVTHETRHFIYFYLGR 257
           NFGSYVTHET+HFIYFYLG+
Sbjct: 61  NFGSYVTHETKHFIYFYLGQ 80


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +3

Query: 36  VIKNADMSEEMQQDAVDCATQALEKXNIEKDIAA-FIKKEFDKKYNPTWHCIVGRNFGSY 212
           +I+ +DM++EM+ +A++    A EK +   + AA  IK+  DKK+  +WH +VG  FG  
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFE 85

Query: 213 VTHETRHFIYFYLGRW 260
           +THE R+ +Y + G++
Sbjct: 86  ITHEVRNLLYMFFGKY 101


>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
          Length = 354

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 138 FIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFY 248
           ++K+E D    PT+  + G  +G     +T+HFIY Y
Sbjct: 42  YVKREGDPLVRPTFP-VAGFTYGIQYAAKTKHFIYVY 77


>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
          Length = 702

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 165 YNPTWHCIVGRNFGSYVTHETRHFIYFYLGRWLYCSLRAVRPFSIT 302
           YNPT  C +   +   V   +   +  YLGR +    +A RPFS++
Sbjct: 76  YNPTILCELHPKWRRSVQGGSEESVCIYLGRVVGLGFQAARPFSVS 121


>SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 452 FSSECESGCTVFTYTVYLIEIHNAGH 529
           F  + + G TV+++TV+LI I++A H
Sbjct: 246 FDPDAQYGSTVYSFTVFLILINSASH 271


>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 353 ADSHARLGLWYIPIGS*QPECGRRRQG*CWCERFSSECESGC 478
           AD +  +GLW+  +G         +   C  E+F  EC+  C
Sbjct: 308 ADVYYNIGLWFKSLGDNGQAMVNFKNALCIYEKFGEECKQAC 349


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 388 NVPQPEPRMRICKGYPSDNTASAANKKIEVMLNGLT 281
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,071,613
Number of Sequences: 59808
Number of extensions: 420713
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)