Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11005
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   165   3e-41
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    76   3e-14
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    59   3e-09
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    59   3e-09
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.4  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  165 bits (401), Expect = 3e-41
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = +3

Query: 18  MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGR 197
           M DRKAVIKNADMS++MQQDA+DCATQALEK NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 198 NFGSYVTHETRHFIYFYLGR 257
           NFGSYVTHET+HFIYFYLG+
Sbjct: 61  NFGSYVTHETKHFIYFYLGQ 80


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/74 (41%), Positives = 49/74 (66%)
 Frame = +3

Query: 33  AVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 212
           A ++++ M   M+Q+A   A +++   ++E DIA  +K  FD++Y P WHCI G++FGS+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117

Query: 213 VTHETRHFIYFYLG 254
           VT E   FIYF +G
Sbjct: 118 VTFEPDSFIYFRIG 131


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = +3

Query: 18  MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGR 197
           M + K  +K  DM +  +   +    +A    NI+KD+AAF+K+E DKK+  TWH I G+
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60

Query: 198 NFGSYVTHETRHFI 239
            FGS V++E  HFI
Sbjct: 61  CFGSRVSYEMGHFI 74


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)
 Frame = +3

Query: 36  VIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYV 215
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRNFGS++
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 110

Query: 216 THETRHFIYFYLGR 257
             +   FI+F + +
Sbjct: 111 --DPIQFIHFTVSK 122


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/74 (35%), Positives = 47/74 (63%)
 Frame = +3

Query: 36  VIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYV 215
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRNFGS++
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 92

Query: 216 THETRHFIYFYLGR 257
             +   FI+F + +
Sbjct: 93  --DPIQFIHFTVSK 104


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 36  VIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKK 164
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 199 LRPTMQCQVGLYFLSN 152
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 199 LRPTMQCQVGLYFLSN 152
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,133
Number of Sequences: 27780
Number of extensions: 305648
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)