Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11005
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 122 3e-28
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 79 4e-15
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 77 9e-15
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 77 2e-14
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 75 5e-14
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 66 2e-11
At1g54680.1 68414.m06234 expressed protein 29 4.1
At3g02910.1 68416.m00286 expressed protein contains Pfam domain ... 28 7.2
At5g35370.1 68418.m04204 lectin protein kinase family protein co... 27 9.5
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 27 9.5
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 122 bits (293), Expect = 3e-28
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = +3
Query: 27 RKAVIKNADMSEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFG 206
++AVIK+ADM ++MQ++A++ A A EK ++EKDIA IKKEFDKK+ TWHCIVGRNFG
Sbjct: 18 KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFG 77
Query: 207 SYVTHETRHFIYFYL 251
SYVTHET HF+YFYL
Sbjct: 78 SYVTHETNHFVYFYL 92
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +3
Query: 18 MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEK--DIAAFIKKEFDKKYNPTWHCIV 191
M + KAV+ + DM + M++DA+ A++AL+ ++ + IA FIKKEFD+ Y W CIV
Sbjct: 1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60
Query: 192 GRNFGSYVTHETRHFIYFYLG 254
G +FGS+VTH + FI+F +G
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVG 81
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 77.4 bits (182), Expect = 9e-15
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 18 MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNI--EKDIAAFIKKEFDKKYNPTWHCIV 191
M + KA ++ DM +MQ A+ A+Q+L+ ++ IAA IKKEFD++Y W C+V
Sbjct: 1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60
Query: 192 GRNFGSYVTHETRHFIYFYLG 254
G NFG + TH FIYF+LG
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLG 81
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Frame = +3
Query: 18 MCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIE--KDIAAFIKKEFDKKYNPTWHCIV 191
M + KA+++++DM +MQ A+ A+QAL+ ++ K IA IKKEFD++Y W C+V
Sbjct: 1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60
Query: 192 GRNFGSYVTHETRHFIYFYL 251
G NFG + TH FIYF L
Sbjct: 61 GSNFGCFFTHSKGTFIYFQL 80
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 74.9 bits (176), Expect = 5e-14
Identities = 43/87 (49%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Frame = +3
Query: 48 ADMSEEMQQDAVDCATQALEKXN--IEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTH 221
ADM MQ A CA L+ K +A +KKEFDK Y P WHCIVG +FGS+VTH
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTH 181
Query: 222 ETRHFIYFYLGRWLYCSL--RAVRPFS 296
T FIYF + + LY L VRP S
Sbjct: 182 STGCFIYFSMDK-LYVLLFKTKVRPAS 207
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +3
Query: 3 QTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKXNIEKD---IAAFIKKEFDKKYNP 173
+ QD+ + ++ +DM Q A + + L + D +A +KK+FD Y P
Sbjct: 26 EQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGP 85
Query: 174 TWHCIVGRNFGSYVTHETRHFIYFYLGR 257
WHCIVG +FGSYVTH T F+YF + +
Sbjct: 86 AWHCIVGTSFGSYVTHSTGGFLYFQIDK 113
>At1g54680.1 68414.m06234 expressed protein
Length = 289
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 30 KAVIKNADMSEEMQ-QDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFG 206
K + K DMS + + +D ++++E +++D + KE + K +P ++
Sbjct: 63 KLLPKKLDMSSKTDLRSLIDSVSRSIESVYVQED-SVRTSKEMEIKTSPE------EDWF 115
Query: 207 SYVTHETRHFIYFYL 251
S V HE+ HF+ YL
Sbjct: 116 SVVQHESGHFLVGYL 130
>At3g02910.1 68416.m00286 expressed protein contains Pfam domain
PF03674: Uncharacterised protein family (UPF0131)
Length = 187
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 57 SEEMQQDAVDCATQALEKXNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHF 236
+EE +++ D T+A +E A + K ++++ W GR+FG+Y +E R +
Sbjct: 109 AEEEEEEEGDLETEAPSSCVVE---AYYAHKSYEEEL---WRRNRGRSFGAYTENEARGY 162
Query: 237 I 239
+
Sbjct: 163 V 163
>At5g35370.1 68418.m04204 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 870
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 220 CVTYEPKLRPTMQCQVGLY 164
CV EP LRPTM VG++
Sbjct: 783 CVHEEPALRPTMAAVVGMF 801
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 486 KTVHPLSH-SLENRSHQH*PCLLLPHSGC*LPMGMYHS 376
KTV+PL ++E S+ H C HSGC L Y S
Sbjct: 111 KTVYPLEKVTMEGESY-HKTCFRCTHSGCPLTHSSYAS 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,254
Number of Sequences: 28952
Number of extensions: 272548
Number of successful extensions: 555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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