Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11004X
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.54 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.7  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 343 YVTGYTMLMYDTIFVP*INGSYLRPL 266
           YV+GY   + D   +P +   YLRPL
Sbjct: 16  YVSGYLENIRDRRVLPTVEPGYLRPL 41


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = -1

Query: 338 YWLYHAYVRYYL 303
           YWL+H ++ +++
Sbjct: 599 YWLFHCHIEFHV 610


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 462 RCNCTP*FIYKSFYFESCFCKTRRSQSGS*VFTEVN 355
           RC C P F  K  +     CK    ++G     ++N
Sbjct: 53  RCQCQPGFTGKYCHENINDCKVNPCENGGTCVDKIN 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,882
Number of Sequences: 336
Number of extensions: 2540
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)