Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11004X
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   3.0  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   3.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   4.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   7.0  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 159 QVLLQVKFNTQCIYYYINLNLKQTQKSSTLHSMRLSVWV*YICRSGICGC 10
           ++LL       C  ++  L+L + +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 340 HTARVIHLSENLRSAL*TTRFTKTAFEIKGFIDKLR 447
           H ARV HLS +    L +  +  T F+ K F D+ R
Sbjct: 309 HAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 302 EDSIVHKHGIASNILPE*FTSVKTYDPLC 388
           E+   H  G+++  +PE F S   Y P C
Sbjct: 253 ENEFYHPQGVSTQKMPEVFVSGLVYSPDC 281


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 205 RCIQSLAVTYINLQFAGTFT--GKI*YTMYLLLYKPKLKA 92
           + + SL   + N QF  ++T   +   T+YLLL+ PKL+A
Sbjct: 322 KTVDSLFNIWSNAQFLRSYTLLAQESLTIYLLLFIPKLEA 361


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 332 LYHAYVRYYLRTVDKRFVPTSSAKDPIRKTEFDNQ--SYLISLTAMHSVTGSY 180
           +YH   + Y    D+   PTS    P+R++ F  +  S+L+ L  + +  GSY
Sbjct: 269 IYHTISKKYELIDDQEETPTSLIPIPLRESAFQQKKGSFLV-LGNVVATKGSY 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,299
Number of Sequences: 5004
Number of extensions: 40898
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)