Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11004X
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)              28   5.5  
SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  

>SB_16673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 290 KRFVPTSSAKDPIRKTEFDNQSYLISLTAMHSVTGSY 180
           KR +PTS+ K   R  E D+Q  L+    +   TG+Y
Sbjct: 62  KRMMPTSTTKYIDRAMEIDSQDALVLRKTVREDTGTY 98


>SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)
          Length = 216

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 222 SDQSHCDAFSHWQLHT*IYNLQVLLQVKFNTQCIYYYINLNLKQTQKSSTL 70
           S  ++ D+   WQ     +N  V + V F    ++ YI+ N   TQ SSTL
Sbjct: 53  SQYANFDSLGFWQTQ---FNNMVAVAVFFAWIKVFKYISFNKTMTQLSSTL 100


>SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 329 YHAYVRYYLRTVDKRFVPTSSAKDPIRK 246
           Y  YVRY LR + ++ VPT   + P+R+
Sbjct: 106 YLVYVRYELRPLPEQNVPTPRKRLPLRQ 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,201
Number of Sequences: 59808
Number of extensions: 284037
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)