Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11004X
         (527 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533513-1|CAG38544.1|  362|Homo sapiens RNF32 protein.                30   4.4  
BT007037-1|AAP35686.1|  235|Homo sapiens ring finger protein 32 ...    30   4.4  
BC015416-1|AAH15416.1|  235|Homo sapiens RNF32 protein protein.        30   4.4  
AF441222-1|AAM18664.1|  362|Homo sapiens ring finger protein RNF...    30   4.4  

>CR533513-1|CAG38544.1|  362|Homo sapiens RNF32 protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -1

Query: 428 PFISKAVFVKRVVHRADRKFSLR*ITLAVCYWLYHAYVRYYLRTVDKRFVPTSSAKDPIR 249
           P   K  +  RV+H   R F ++ +T    YW     VR + R + ++ VP + AK  +R
Sbjct: 166 PLCRKNQYQTRVIHDGARLFRIKCVTRIQAYW-RGCVVRKWYRNL-RKTVPPTDAK--LR 221

Query: 248 KTEFDNQSYLIS 213
           K  F+ +   IS
Sbjct: 222 KKFFEKKFTEIS 233


>BT007037-1|AAP35686.1|  235|Homo sapiens ring finger protein 32
           protein.
          Length = 235

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -1

Query: 428 PFISKAVFVKRVVHRADRKFSLR*ITLAVCYWLYHAYVRYYLRTVDKRFVPTSSAKDPIR 249
           P   K  +  RV+H   R F ++ +T    YW     VR + R + ++ VP + AK  +R
Sbjct: 166 PLCRKNQYQTRVIHDGARLFRIKCVTRIQAYW-RGCVVRKWYRNL-RKTVPPTDAK--LR 221

Query: 248 KTEFDNQS 225
           K  F+ ++
Sbjct: 222 KKFFEKKT 229


>BC015416-1|AAH15416.1|  235|Homo sapiens RNF32 protein protein.
          Length = 235

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -1

Query: 428 PFISKAVFVKRVVHRADRKFSLR*ITLAVCYWLYHAYVRYYLRTVDKRFVPTSSAKDPIR 249
           P   K  +  RV+H   R F ++ +T    YW     VR + R + ++ VP + AK  +R
Sbjct: 166 PLCRKNQYQTRVIHDGARLFRIKCVTRIQAYW-RGCVVRKWYRNL-RKTVPPTDAK--LR 221

Query: 248 KTEFDNQS 225
           K  F+ ++
Sbjct: 222 KKFFEKKT 229


>AF441222-1|AAM18664.1|  362|Homo sapiens ring finger protein RNF32
           protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -1

Query: 428 PFISKAVFVKRVVHRADRKFSLR*ITLAVCYWLYHAYVRYYLRTVDKRFVPTSSAKDPIR 249
           P   K  +  RV+H   R F ++ +T    YW     VR + R + ++ VP + AK  +R
Sbjct: 166 PLCRKNQYQTRVIHDGARLFRIKCVTRIQAYW-RGCVVRKWYRNL-RKTVPPTDAK--LR 221

Query: 248 KTEFDNQSYLIS 213
           K  F+ +   IS
Sbjct: 222 KKFFEKKFTEIS 233


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,884,831
Number of Sequences: 237096
Number of extensions: 1259356
Number of successful extensions: 1510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)