Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11004X
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical...    28   4.8  

>AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43b protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 284 FVPTSSAKDPIRKTEFDNQSY-LISLTAMHSVTGSYIHKFTI 162
           FVP  +++  +R+  ++ +SY  +++T+M  +  +Y   F I
Sbjct: 396 FVPPVTSRQTVRRPNWEKKSYEKVNMTSMPQMVSAYYEGFNI 437


>AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43a protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 284 FVPTSSAKDPIRKTEFDNQSY-LISLTAMHSVTGSYIHKFTI 162
           FVP  +++  +R+  ++ +SY  +++T+M  +  +Y   F I
Sbjct: 393 FVPPVTSRQTVRRPNWEKKSYEKVNMTSMPQMVSAYYEGFNI 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,684
Number of Sequences: 27780
Number of extensions: 224994
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)