Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11002
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 142 8e-33
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 124 3e-27
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 103 4e-21
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 95 1e-18
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 93 8e-18
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 89 7e-17
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 87 3e-16
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 82 2e-14
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 79 8e-14
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 79 8e-14
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 77 3e-13
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 77 6e-13
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 73 9e-12
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 72 1e-11
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 66 8e-10
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 66 1e-09
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 57 5e-07
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 55 2e-06
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 51 3e-05
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 50 4e-05
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 49 1e-04
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 48 3e-04
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 46 0.001
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 46 0.001
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 43 0.006
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 40 0.045
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 39 0.14
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 37 0.42
UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1... 35 1.7
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 35 2.3
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 34 3.0
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 34 3.0
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 3.9
UniRef50_Q1VAL4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_A2DIC8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_Q5AGI4 Cluster: Putative uncharacterized protein; n=2; ... 33 6.9
UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotei... 33 9.1
UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia i... 33 9.1
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 142 bits (344), Expect = 8e-33
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
KGPLII+NKDQGLTR+FRNIPGV+ APGGH+GRF+IWTQSAF RLD +F
Sbjct: 70 KGPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIF 129
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
GSWKTPSK+KKNFNLPQPKMANTD
Sbjct: 130 GSWKTPSKEKKNFNLPQPKMANTD 153
Score = 122 bits (294), Expect = 9e-27
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L+RLLKS+EIR+VLRAP KRV+RATRKLNPLTN KAMLKLNPYAAVLK+KA+L+ +RKN
Sbjct: 154 LSRLLKSEEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKN 213
Query: 434 LKALADAEKSGLKLSKRNPAMKAEK 508
+AL AEK G+KL +PA+KA K
Sbjct: 214 KRALEVAEKRGIKLPDDDPAVKALK 238
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 124 bits (298), Expect = 3e-27
Identities = 52/84 (61%), Positives = 65/84 (77%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
+GPL++++KD+GL +AFRNIPG+E APGGH+GRFVIWT+SAF RL+ LF
Sbjct: 208 RGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLF 267
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
G+WK PS KK +NLPQPKMANTD
Sbjct: 268 GTWKKPSTLKKGYNLPQPKMANTD 291
Score = 95.5 bits (227), Expect = 1e-18
Identities = 50/91 (54%), Positives = 64/91 (70%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L+RLLKS+EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L +R
Sbjct: 292 LSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTV 351
Query: 434 LKALADAEKSGLKLSKRNPAMKAEKYARGDA 526
K LA A+K ++L+K + A A K A A
Sbjct: 352 AKVLAKAKKQNVELAKSHFANVATKAAANRA 382
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 103 bits (247), Expect = 4e-21
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
+GP II+N+D G+ +AFRNIPG+ APGGH+GRF IWT+SAF +LD L+
Sbjct: 205 RGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 264
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
G+W+ + K N+NLP KM NTD
Sbjct: 265 GTWRKAASLKSNYNLPMHKMINTD 288
Score = 66.1 bits (154), Expect = 8e-10
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L+R+LKS EI++ LRAP K++ R K NPL N + MLKLNPYA ++R IL R
Sbjct: 289 LSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHK 348
Query: 434 LKA-LADAEKSGLKLSKRNPAMKAEK 508
L+ A A + L+ A A K
Sbjct: 349 LRVDKAAAAAAALQAKSDEKAAVAGK 374
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 95.5 bits (227), Expect = 1e-18
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
+GPL+++++D G+TRAFRNIPGVE APGGH+GRF+IWT+SAF +LD +F
Sbjct: 208 RGPLVVYSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIF 267
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
G+ + S KK + P MA TD
Sbjct: 268 GTSTSKSASKKGWKPPTNIMAQTD 291
Score = 55.2 bits (127), Expect = 1e-06
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Frame = +2
Query: 206 TKEELQPAPTEDGQH*LTRLLKSDEIRKVLRAPNKRVIRATRKL--NPLTNNKAMLKLNP 379
+K+ +P Q LTRL+ SDEI+ L AP IRA L NPL N AM KLNP
Sbjct: 276 SKKGWKPPTNIMAQTDLTRLINSDEIQSALNAPKLGAIRAHAPLKRNPLKNKSAMDKLNP 335
Query: 380 YAAVLKR-KAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKYARGD 523
YA V + +A + R K A ++A +S + K +MK + G+
Sbjct: 336 YAKVAREMQARAQEERSKAKAAKSNAARSAVG-QKFYESMKVDSNYEGE 383
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 92.7 bits (220), Expect = 8e-18
Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 KGPLIIFNKDQG---LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 173
+GPL+I+N D+ L +AFRNIPGVE APGGHLGRF++WT SAFG LD
Sbjct: 184 RGPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALD 243
Query: 174 PLFGSWKTPSKQKKNFNLPQPKMANTD 254
++GS PS KK+F LP M D
Sbjct: 244 TIYGSTTEPSALKKDFLLPSTMMKQPD 270
Score = 39.5 bits (88), Expect = 0.079
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Frame = +2
Query: 191 EDTIKTKEELQPAPTEDGQH*LTRLLKSDEIRKVLR-----APNKRVIRATRKLNPLTNN 355
E + K+ L P+ T Q L++++ S +I+KVLR A +KR + +K NPL N
Sbjct: 251 EPSALKKDFLLPS-TMMKQPDLSKIINSSDIQKVLRPVRGGAVSKRGV--VQKKNPLKNF 307
Query: 356 KAMLKLNPYAAVLKRKAI 409
+ L+LNPYAA ++ +
Sbjct: 308 QVQLRLNPYAATFSKEKL 325
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 89.4 bits (212), Expect = 7e-17
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +3
Query: 3 KGPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPL++ FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD L
Sbjct: 206 KGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKL 265
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD-SHVFSSLMRSGRSSVLPTNA*SVLH 329
FG+++ S K + L +P + N D + + +S + V P VLH
Sbjct: 266 FGTYRYASVLKDGYQLLRPLLTNPDLARIINS--NQVQEKVQPAKTTKVLH 314
Score = 44.0 bits (99), Expect = 0.004
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 LTRLLKSDEIR-KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRK 430
L R++ S++++ KV A +V+ +K NPL N KAM +LNPYA + A+ ++
Sbjct: 291 LARIINSNQVQEKVQPAKTTKVLHDVQKKNPLKNTKAMDRLNPYAKKQRAAAVAAIK--- 347
Query: 431 NLKALADAEKSGLKLSKRNPAMK 499
A G K K+N A+K
Sbjct: 348 -------ANTKGTKKIKKNKALK 363
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 87.4 bits (207), Expect = 3e-16
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPL++ FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD L
Sbjct: 52 KGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKL 111
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
FG+++ S K + L +P + N D
Sbjct: 112 FGTYRYSSILKDGYQLLRPLLTNPD 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 LTRLLKSDEIR-KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRK 430
L R++ S++++ KV A V+ +K NPL N+KA+ +LNPYA ++R
Sbjct: 137 LARIINSNQVQEKVQAAKQTTVLHEVQKKNPLKNSKALDRLNPYAK----------KQRA 186
Query: 431 NLKALADAEKSGLKLSKRNPAMKAEKYA 514
A A +G K K+N A+K + A
Sbjct: 187 AATAAVKAHTTGTKKIKKNKALKKQSRA 214
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 81.8 bits (193), Expect = 2e-14
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Frame = +3
Query: 3 KGPLIIFN---KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 173
+GPL++++ + L RAFRN+PGVE APGGHLGRF+IW+ SAF LD
Sbjct: 207 RGPLVVYDGATDGKELVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALD 266
Query: 174 PLFGSWKTPSKQKKNFNLPQPKMANTD------SHVFSSLMRSGRSSVLPTNA 314
++G+ PS KK+F LP ++ D S S++R+ + S L A
Sbjct: 267 NIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQSVIRAAKGSALTKRA 319
Score = 40.3 bits (90), Expect = 0.045
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +2
Query: 260 RLLKSDEIRKVLRAPNKRVI--RA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 409
RL+ S E++ V+RA + RA +K NPL N + +L+LNPYAA ++ I
Sbjct: 296 RLINSSELQSVIRAAKGSALTKRAGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 79.4 bits (187), Expect = 8e-14
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +3
Query: 6 GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 185
GPLII++ D G+ +AFRNIPGV+ APGG +GR IW++ AF +LD ++G
Sbjct: 206 GPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYG 265
Query: 186 SWKTPSKQKKNFNLPQPKMANTD 254
KKN+ LP+P + N D
Sbjct: 266 KTFQKYVTKKNYILPKPIVNNAD 288
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 79.4 bits (187), Expect = 8e-14
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
+G LI+ ++++GL AFRNI GV+ APGGHLGRF+IWT+ A+ +LD L+
Sbjct: 205 RGVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLY 264
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
G+ + K + P P + NTD
Sbjct: 265 GTRFRTALLKNEYKHPTPSVTNTD 288
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 77.4 bits (182), Expect = 3e-13
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLIIF-NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPL+++ N D +AFRNIPGV+ APG H+GRF+IWT+SAF +L+ +
Sbjct: 206 KGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTI 265
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
FG+ K ++ K F + +MA D
Sbjct: 266 FGTQKKMAQGKSGFRIAHAQMAVPD 290
Score = 36.3 bits (80), Expect = 0.74
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVI-RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRK 430
+ R++ + E K+LRA K V+ + ++ NPL N AM+KLNPYA + K + +
Sbjct: 291 MKRVVVAAEKAKLLRA--KIVLPKVPKRANPLKNWAAMVKLNPYAKIASHKLAQVAKAQA 348
Query: 431 NLKALADAEKSGLKLSKR 484
KA A+ + +K+
Sbjct: 349 AHKAQYAAKMEKILAAKK 366
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 76.6 bits (180), Expect = 6e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
KGPL+I+N+D+G+ +AFRNIPGVE AP +GR +WT+SAF LD ++
Sbjct: 202 KGPLVIYNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIY 261
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
S KK F+LP+ M N D
Sbjct: 262 ES-------KKRFSLPRSIMTNAD 278
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 72.5 bits (170), Expect = 9e-12
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPLI++ + L +AFRNIPGVE APGGHLGRFVIWT+S+F +LD +
Sbjct: 68 KGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSI 127
Query: 180 FGSWKTPSKQKK 215
+ S++ ++++
Sbjct: 128 YRSFEKKLRRRR 139
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 72.1 bits (169), Expect = 1e-11
Identities = 32/83 (38%), Positives = 46/83 (55%)
Frame = +3
Query: 6 GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 185
GPL+++ +D G+ +A RNI GV+ APGG GR I+T+ A RL ++G
Sbjct: 209 GPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYG 268
Query: 186 SWKTPSKQKKNFNLPQPKMANTD 254
S+ S K + LP+P M N D
Sbjct: 269 SYTHGSSSKVGYTLPRPAMTNAD 291
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 66.1 bits (154), Expect = 8e-10
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
KGPL+I+N + + R FRN+PGV+ APG H GR ++WT+SAF LD ++
Sbjct: 193 KGPLVIYNTED-VARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVY 251
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
+ K+N+ LP+ + TD
Sbjct: 252 AA-------KQNYTLPRSCITQTD 268
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L+R+LKS EI++ L+AP K++ R K NPL N MLKLNPYA ++R I LR+ KN
Sbjct: 128 LSRILKSPEIQRALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTI--LRQAKN 185
Query: 434 LKALADAEKSGLKLSKRNPAMKAEK 508
K D + L+ + +K
Sbjct: 186 HKLRMDKSAAALEAKSEEKGVPGKK 210
Score = 41.9 bits (94), Expect = 0.015
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 156 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTD 254
AF +LD L+G+W + K N+NLP KM NTD
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTD 127
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 56.8 bits (131), Expect = 5e-07
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
KG LI+ + + FRNI GV+ APGG GR +IWT+SAF +LD +F
Sbjct: 202 KGILIVHGESSEML-GFRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIF 260
Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
G + ++ F LP + + D
Sbjct: 261 GGVEREAELTPGFKLPNRIVTHDD 284
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRK 430
L+R+LK EI++ L+AP K + K NPLTN + MLKLNP A + R IL E R K
Sbjct: 9 LSRILKIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTILPEARNHK 68
Query: 431 -NLKALADAEKSGLKL 475
+K+ ++G +L
Sbjct: 69 LQVKSRKQQPRTGSQL 84
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/76 (43%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 6 GPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
GPLII +G RAFRNIPGVE AP G LGR +W++SAF LD
Sbjct: 199 GPLIILRATAVEG-KRAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDDY 257
Query: 180 FGSWKTPSKQKKNFNL 227
P+K KN +L
Sbjct: 258 IK--MMPTKLLKNADL 271
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 50.4 bits (115), Expect = 4e-05
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 173
K L++ ++ GL +A RNIPGV+ APGG GR +WT++A G L+
Sbjct: 248 KSILLVVSQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
KGPL++ D+G++ RN GV+ APG H GR I+T+SA +L LF
Sbjct: 195 KGPLVVVGNDRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 158
K L++ KD G+ +A +N+PGV+ APG H GR +WT+SA
Sbjct: 192 KSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRV-IRATRKLNPLTNNKAMLKLNP 379
L+R+LK I++ LRAP KR+ R +K NPL N + MLKLNP
Sbjct: 206 LSRILKRPGIQRALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248
Score = 41.9 bits (94), Expect(2) = 0.004
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 156 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTD 254
AF +LD L+G+W + K N+NLP KM NTD
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTD 205
Score = 21.4 bits (43), Expect(2) = 0.004
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRA 50
+G II+N+D G+ +A
Sbjct: 146 RGSCIIYNEDNGIIKA 161
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 GPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 173
GPL++ +G RAFRNIPGV+ AP G LGR VI+++SAF LD
Sbjct: 198 GPLVVMRSTAVEG-KRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +3
Query: 6 GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
GPL++F + ++ RNI ++ APGGHLGR IW+ AF L+ +
Sbjct: 200 GPLLVFKNN---LKSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 40.3 bits (90), Expect = 0.045
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 3 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
K LI+ ++D+G+ RN PGV+ APG H GR ++T A L+
Sbjct: 199 KSVLIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERL 258
Query: 183 G 185
G
Sbjct: 259 G 259
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 6 GPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 173
GPLII + + +A RN+ GV+ APG H GR I+T+S+ LD
Sbjct: 202 GPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 37.1 bits (82), Expect = 0.42
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 12 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
+++ + + L A RN PGV+ APGG GR +WT A +L LF
Sbjct: 226 VVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282
>UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1;
Flavobacterium psychrophilum JIP02/86|Rep: Putative cell
surface protein SprD - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 1286
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 308 KRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEK 460
K +++AT+K NP T N + K P +R L L+ K+ KA A+AEK
Sbjct: 310 KPIVKATKKTNPGTKNATVNKKTPADLQKERAEALALKTEKD-KARAEAEK 359
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 34.7 bits (76), Expect = 2.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 12 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 170
++I ++ +AFR++PGV+ APGG GR I+T+ A L
Sbjct: 198 VLIVARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 44 SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQ 223
+R+PQH R G G+ P W R LD+V +R A + + ++ +E L
Sbjct: 269 ARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEEGLH 328
Query: 224 PAPTEDGQH 250
A + +H
Sbjct: 329 AAGADADEH 337
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 3 KGPLIIFNK-DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 170
KGPLI+ N ++ L +A NIPG++ APG GR +I ++ A L
Sbjct: 205 KGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETL 261
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 139 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 240
SSG H +GL+ S +G+H R++S+C +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_Q1VAL4 Cluster: Putative uncharacterized protein; n=1;
Vibrio alginolyticus 12G01|Rep: Putative uncharacterized
protein - Vibrio alginolyticus 12G01
Length = 46
Score = 33.1 bits (72), Expect = 6.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 280 LIRLEKTCESVLAIFGWGRLKFFFCFDGVFHDPNK 176
+I T + IF GRLK F FDG+ H PNK
Sbjct: 8 VIETNNTASKIWKIFRKGRLKDFGKFDGMVHYPNK 42
>UniRef50_A2DIC8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 928
Score = 33.1 bits (72), Expect = 6.9
Identities = 22/86 (25%), Positives = 46/86 (53%)
Frame = +2
Query: 233 TEDGQH*LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 412
+E G+H + +++DE+ VL +++ IR+T LNP ++K + ++ + +
Sbjct: 834 SESGKHYILAKIQNDEMFGVLDQISRKFIRSTGNLNPYMSSKVVRN-----GIVLPQGFI 888
Query: 413 ELRRRKNLKALADAEKSGLKLSKRNP 490
+L + + L+D E S + S+ NP
Sbjct: 889 DLEVVEEISNLSDEELSKIS-SEINP 913
>UniRef50_Q5AGI4 Cluster: Putative uncharacterized protein; n=2;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 197
Score = 33.1 bits (72), Expect = 6.9
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 LRAPNKRV-IRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGL 469
+R +KR+ IR ++K+ + + + M + N +KRK I+ +++R+N+K + +K
Sbjct: 1 MRERSKRIMIRRSKKIMNMKSKRNMKERNKKIMNVKRK-IMNMKKRRNMKKRRNMKKRKN 59
Query: 470 KLSKRNPAMKAEK 508
+RN K +K
Sbjct: 60 MKKRRNMKRKRKK 72
>UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotein;
n=1; Ureaplasma parvum|Rep: Unique hypothetical membrane
lipoprotein - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 705
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 308 KRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRN 487
K+ T + A+L + Y+ VLK KA +L+ NLK + D + + L +++
Sbjct: 47 KKFKTTTNSIELFLEGSAVLASHSYSVVLKEKATGDLKTINNLKLVKDNDLNKLIINELK 106
Query: 488 PAMKAE 505
P M E
Sbjct: 107 PNMGYE 112
>UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia
intracellularis PHE/MN1-00|Rep: Outer membrane protein -
Lawsonia intracellularis (strain PHE/MN1-00)
Length = 601
Score = 32.7 bits (71), Expect = 9.1
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 335 LNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 466
LNP+ KA L + PY K+K IL LR R + D K+G
Sbjct: 419 LNPIQGTKATLNVTPYIGKYKKK-ILTLRSRFDFSFYIDVLKTG 461
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,899,022
Number of Sequences: 1657284
Number of extensions: 12104480
Number of successful extensions: 32950
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 31578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32906
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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