Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11002
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   101   1e-22
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   101   1e-22
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    29   0.65 
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   3.5  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    26   4.6  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   8.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (242), Expect = 1e-22
 Identities = 45/84 (53%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
           +GPL++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +F
Sbjct: 205 RGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
           GS    ++ KKN+ LP+  ++N D
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNAD 288



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 254 LTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRR 427
           +TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA ++L   
Sbjct: 289 VTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTG 346

Query: 428 KNLKALAD 451
           K  KA  +
Sbjct: 347 KTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (241), Expect = 1e-22
 Identities = 45/84 (53%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 182
           +GPL++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +F
Sbjct: 205 RGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 183 GSWKTPSKQKKNFNLPQPKMANTD 254
           GS    ++ KKN+ LP+  ++N D
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNAD 288



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 254 LTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRR 427
           +TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA +++   
Sbjct: 289 VTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSE 346

Query: 428 KNLKALAD 451
           K  KA  +
Sbjct: 347 KTPKAAGE 354


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 546 ESLLDVLASPLAYFSAFIAGFRLDSFNPLFSASARAFKFFLLR 418
           +SL  +L  PL YF +F     L +F P+F+A     ++ + R
Sbjct: 382 KSLCAILLLPLTYFPSFSYCLELQNFLPVFNAQDPNLRYDIAR 424


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -2

Query: 541 PP*CSCVSSRVFLSLHSGVSLRQLQSTLLGISKSLQVLPSAQL*DSFPLQHG 386
           PP  S  SS + LSL S  SL+Q + T   +S + + + S QL    P+ HG
Sbjct: 134 PPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHG 185


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 27/94 (28%), Positives = 45/94 (47%)
 Frame = -2

Query: 520 SSRVFLSLHSGVSLRQLQSTLLGISKSLQVLPSAQL*DSFPLQHGRVRIEFQHRLVISEW 341
           S+ V L  HSG    +  S +  I+ S     S++     P    +V +EF+ RL I + 
Sbjct: 165 STAVLLKHHSG---SKSASAISNIAPSHSNSTSSRRPYIHPAFLSQVAVEFRKRLNIGDR 221

Query: 340 VQFACSTDHAFVGSTEDLPDLIRLEKTCESVLAI 239
           V+       AF+GS E +  L+ + +T +  LA+
Sbjct: 222 VKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLAL 254


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 189 WKTPSKQKKNFNL--PQPKMANTDSHVFSSLMRSGRSSV 299
           WK P    K FNL   Q    NT S +  SL  + R ++
Sbjct: 444 WKVPHTSDKRFNLYVTQRNDPNTKSQLIESLPMNSRDTI 482


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +2

Query: 146 DSVRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*LTRLLKSDEIRKVLR--APN---K 310
           DSV      P   +++   KT+ E  P P +       + LK   +R+ LR   PN    
Sbjct: 16  DSVLNTPIRPKYEILKSKKKTQNENDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSN 75

Query: 311 RVIRATRKLNPLTN-NKAMLKLN 376
           +V   TR L   +N + A++K N
Sbjct: 76  QVSSRTRALTKRSNSSNAIIKAN 98


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 385 RVRIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 269
           + ++ F H L + +WV+ +       +G   + PD +RL
Sbjct: 171 KYKVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,034
Number of Sequences: 5004
Number of extensions: 46910
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)