Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11002
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 97 9e-21
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 96 2e-20
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.6
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.1
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 8.4
03_03_0125 - 14630078-14630136,14630197-14631160 28 8.4
03_03_0122 - 14617879-14618871 28 8.4
02_04_0073 - 19471254-19472681 28 8.4
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 8.4
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 97.5 bits (232), Expect = 9e-21
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+SAF +L+ +
Sbjct: 209 KGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEV 268
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
+G+++ PS +KK F LP+PKMAN D
Sbjct: 269 YGTFEAPSLKKKGFILPRPKMANAD 293
Score = 54.4 bits (125), Expect = 8e-08
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +2
Query: 197 TIKTKEELQPAPTEDGQH*LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 376
++K K + P P L R++ SDE++ V++ NK V R ++ NPL N A+LKLN
Sbjct: 276 SLKKKGFILPRPKMANAD-LGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLN 334
Query: 377 PYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEKYARGDA 526
PY ++ A L E R K A EK K +K +P A+ A G A
Sbjct: 335 PYFGTARKMATLAEAARIK-----ARKEKLDSKRTKLSPEEAAKVKAAGKA 380
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+ AF +LD +
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEV 267
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
+G + TP+ +KK F LP+PKMAN D
Sbjct: 268 YGGFDTPALKKKGFVLPRPKMANAD 292
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/91 (35%), Positives = 48/91 (52%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L+RL+ SDE++ V++ NK V + NPL N A+LKLNPY ++ A L +
Sbjct: 293 LSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAAL----AEA 348
Query: 434 LKALADAEKSGLKLSKRNPAMKAEKYARGDA 526
+ A EK K +K +P ++ A G A
Sbjct: 349 ARVKARTEKLDSKRTKLSPEESSKIKAAGKA 379
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 176 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 54
G+ A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 111 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 251
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 142 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 50
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 129 GRFVIWTQSAFGRL-DPLFGSWK 194
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 129 GRFVIWTQSAFGRL-DPLFGSWK 194
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>02_04_0073 - 19471254-19472681
Length = 475
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 151 SPHSAGLTPYSGHGRHHQNKRRTSTCPN 234
+P G +P S HG HH++++ T N
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNN 47
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 161 ECGLSPDDETSKMASRSQLQEVQ 93
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,989
Number of Sequences: 37544
Number of extensions: 361332
Number of successful extensions: 1008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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