Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11002
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                58   5e-09
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   8.5  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  28   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/44 (59%), Positives = 29/44 (65%)
 Frame = +3

Query: 3   KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 134
           KGPLII+N DQGL +AFRN+PGVE             PGGHLGR
Sbjct: 202 KGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = +2

Query: 320 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 466
           RA  K NPL N   ML+LNPYA   KR  +L + RR+  K  A A+K G
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +2

Query: 269 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 373
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +2

Query: 221 QPAPTEDGQH*LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 400
           QP P++      + L   D I +    PNK    +T + NP+     ++K  PY  +L++
Sbjct: 133 QPNPSKPELVCSSLLSLQDAINRAAVEPNKT---STTE-NPIERQSFLVKNRPYFTMLRK 188

Query: 401 KAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKY 511
               EL+++     L  +    +  S   PA  A+++
Sbjct: 189 SYDKELKKKAVFLCLIVSNPKKIDESCPKPASAADEH 225


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 152 LSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 18
           L+ D+E   +   + L++V + +   + T  VA G S TL+L+++
Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = +1

Query: 169 LTPYSGHGRHHQNKRRTSTCPNRRWPTLTHTSSQV**DQEGPPCSQQTRDPCYTQIEP 342
           L P S H         +  CP    PT+  T        E   C Q    PCYTQ  P
Sbjct: 615 LPPVSSHSMFQHQPHPSMACP----PTMMVTPDGRPLSGEWRHCMQAAYQPCYTQQAP 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,974
Number of Sequences: 59808
Number of extensions: 370238
Number of successful extensions: 1175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)