Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11002
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    89   2e-18
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    29   2.5  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    29   2.5  
Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   7.5  
AL032646-11|CAE46682.1|  193|Caenorhabditis elegans Hypothetical...    27   9.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 185
           GP++I+ +D    RAFRNIPGV+            APGGHLGR +IWT+SAF +LD ++G
Sbjct: 205 GPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYG 264

Query: 186 SWKTPSKQ-KKNFNLPQPKMANTDSHVFSSLMRS 284
           +    S Q KK +++P P MAN+D   FS ++RS
Sbjct: 265 TTVANSSQLKKGWSVPLPIMANSD---FSRIIRS 295



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/56 (32%), Positives = 35/56 (62%)
 Frame = +2

Query: 257 TRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRR 424
           +R+++S+E+ K +RAP K  +      NPL     + KLNPYA++L++ +   +++
Sbjct: 290 SRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 543 SLLDVLASPLAYFSAFIAGFRLDSFNPLFSASARAFKFFL-LRSSKIAFLFSTAA*GLSF 367
           S L+VLA P  Y  +F +GF   S N    AS +  +FF+   S   A +    A    F
Sbjct: 62  SCLEVLAHP--YLHSFNSGFIYFSLNDYLGASQKLLRFFIEAYSGAYASIMCMLAVQFVF 119

Query: 366 SIALLL 349
             A+L+
Sbjct: 120 RYAILM 125


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 543 SLLDVLASPLAYFSAFIAGFRLDSFNPLFSASARAFKFFL-LRSSKIAFLFSTAA*GLSF 367
           S L+VLA P  Y  +F +GF   S N    AS +  +FF+   S   A +    A    F
Sbjct: 62  SCLEVLAHP--YLHSFNSGFIYFSLNDYLGASQKLLRFFIEAYSGAYASIMCMLAVQFVF 119

Query: 366 SIALLL 349
             A+L+
Sbjct: 120 RYAILM 125


>Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.9 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 540 LLDVLASPLAYFSAFIAGFRLDSFNPLFSASARAFKF-FLLRSSKIA-FLFSTAA*GLSF 367
           LLD ++SP AY S     F +     LF A    +K   L++S K+A F  +  A  L F
Sbjct: 2   LLDSISSPSAYSSILYTIFGISLPIHLFGAYCVLYKTPVLMKSVKLALFNLNFWAATLDF 61

Query: 366 SIALLL 349
           SI L +
Sbjct: 62  SITLFM 67


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 27/72 (37%)
 Frame = +3

Query: 111 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDSHVFSSLMRSGR 290
           A  GH    +          +PLFG       Q  NF   +  +ANT  HV+     S  
Sbjct: 404 AVAGHSAHVIRSEMFVIFGYNPLFGFMH--HVQIYNFETEEWTVANTSDHVYGRFKHSAV 461

Query: 291 SSVLPTNA*SVL 326
               PT A ++L
Sbjct: 462 EYTTPTGATAIL 473


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 27/72 (37%)
 Frame = +3

Query: 111 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDSHVFSSLMRSGR 290
           A  GH    +          +PLFG       Q  NF   +  +ANT  HV+     S  
Sbjct: 404 AVAGHSAHVIRSEMFVIFGYNPLFGFMH--HVQIYNFETEEWTVANTSDHVYGRFKHSAV 461

Query: 291 SSVLPTNA*SVL 326
               PT A ++L
Sbjct: 462 EYTTPTGATAIL 473


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 27/72 (37%)
 Frame = +3

Query: 111 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDSHVFSSLMRSGR 290
           A  GH    +          +PLFG       Q  NF   +  +ANT  HV+     S  
Sbjct: 404 AVAGHSAHVIRSEMFVIFGYNPLFGFMH--HVQIYNFETEEWTVANTSDHVYGRFKHSAV 461

Query: 291 SSVLPTNA*SVL 326
               PT A ++L
Sbjct: 462 EYTTPTGATAIL 473


>AL032646-11|CAE46682.1|  193|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11b protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 189 WKTPSKQKKNFNLPQPKMANTDSHVFSSLMRSGRSSVLPT 308
           W TP KQ K   +P   +  T + + S   R GR ++LPT
Sbjct: 141 WTTPEKQAKTTLVPTVSLIPTFNTLIS---RRGRPTLLPT 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,782
Number of Sequences: 27780
Number of extensions: 268986
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)