Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11002
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 95 3e-20
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 94 7e-20
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 29 2.3
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof... 28 7.0
At4g03940.1 68417.m00557 expressed protein 28 7.0
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind... 28 7.0
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami... 28 7.0
At4g32020.1 68417.m04558 expressed protein NuLL 27 9.2
At4g09970.2 68417.m01632 expressed protein 27 9.2
At4g09970.1 68417.m01633 expressed protein 27 9.2
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 27 9.2
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPL++F + + +AFRN+PGVE APGGHLGRFVIWT+SAF +L+ +
Sbjct: 211 KGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESI 270
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
+GS++ PS++KK + LP+ KM N D
Sbjct: 271 YGSFEKPSEKKKGYVLPRAKMVNAD 295
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/83 (34%), Positives = 40/83 (48%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L R++ SDE++ V+ RA K NPL N M KLNPYA KR ++L R
Sbjct: 296 LARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVK 355
Query: 434 LKALADAEKSGLKLSKRNPAMKA 502
K +K + + A+KA
Sbjct: 356 AKKEKLEKKRKVVTKEEAQAIKA 378
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 179
KGPL+++ + + +AFRN+PGVE APGGHLGRFVIWT+SAF +L+ +
Sbjct: 210 KGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESI 269
Query: 180 FGSWKTPSKQKKNFNLPQPKMANTD 254
+GS++ PS++KK + LP+ KM N D
Sbjct: 270 YGSFEKPSEKKKGYVLPRAKMVNAD 294
Score = 54.8 bits (126), Expect = 5e-08
Identities = 33/83 (39%), Positives = 43/83 (51%)
Frame = +2
Query: 254 LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKN 433
L R++ SDEI+ V+ K RA K NPL N MLKLNPYA KR ++L +R
Sbjct: 295 LARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVK 354
Query: 434 LKALADAEKSGLKLSKRNPAMKA 502
K A+K + A+KA
Sbjct: 355 AKKEKLAKKRKTVTKEEALAIKA 377
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam domains PF01535:
PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1208
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 465 D*SCLSETPL*RLRNTREETQEHQGGSRQETQEAGC*EDPASSQEEGR*EAES 623
D +C E+P L EE +G + + Q G E+P ++EG E ES
Sbjct: 465 DENCEQESPE-NLNEPEEENISEEGDNVEPMQSQGMEENPEEEEKEGEEEEES 516
>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 734
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 465 D*SCLSETPL*RLRNTREETQEHQGGSRQETQEAGC*EDPASSQEEGR*EAES*KGRETQ 644
D +C E P L EE + + Q G E+P ++EG E ES +G + +
Sbjct: 41 DENCEQEPPK-NLHEPEEEKISEEVDDEEPMQSQGMEENPEEEEKEGEEEEESEEGDDVE 99
>At4g03940.1 68417.m00557 expressed protein
Length = 310
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 498 RLRNTREETQEHQGGSRQETQEAGC*EDPASSQEEG 605
R + +R+E+ QGG T+E+ C E+ S + EG
Sbjct: 51 RKKKSRKESSV-QGGDESSTEESDCLEEVKSEKSEG 85
>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
cassette transporter ABC1, Homo sapiens, PIR2:A54774
Length = 947
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = -3
Query: 513 AYFSAFIAGFRLDSFNPLFSASARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFN 334
AYF A + + F +F S KFFLL + F F L SIA LL S F+
Sbjct: 405 AYFLALSTFYII--FLMIFG-SVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFS 461
>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
protein (FBX1) E3 ubiquitin ligase SCF complex F-box
subunit; almost identical to unusual floral organs
(UFO)GI:4376159 from [Arabidopsis thaliana]
Landsberg-erecta; one amino acid difference
Length = 442
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 634 RPFQLSASYLPSSWEEAGSS*QPASWVS 551
R ++LS +Y+PS + +GSS SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 181
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 148 LSPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTHTSSQV**DQEGPPCSQQTR 315
L+P P+S H + H+N S CPNR+ T+++ + + PP SQ +R
Sbjct: 6 LNPQDCLKDPFS-HMKQHRNP---SACPNRQKKTVSNNRT-----RRSPPRSQSSR 52
>At4g09970.2 68417.m01632 expressed protein
Length = 212
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 319 DHAFVGSTEDLPDLIRLEKTCESV 248
D + + +TE+LPDL R+EK E+V
Sbjct: 74 DDSKMNTTEELPDLRRVEKYTETV 97
>At4g09970.1 68417.m01633 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 319 DHAFVGSTEDLPDLIRLEKTCESV 248
D + + +TE+LPDL R+EK E+V
Sbjct: 106 DDSKMNTTEELPDLRRVEKYTETV 129
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 224 PAPTEDGQH*LTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK-LNPYAAVLKR 400
P P +GQ TRL + E+RK++ + + +L+P + K LN Y A L
Sbjct: 348 PNPEFEGQT-KTRL-GNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAA 405
Query: 401 KAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKYARGDA 526
K EL R K++ + S +PA GD+
Sbjct: 406 KRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDS 447
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,731
Number of Sequences: 28952
Number of extensions: 268808
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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