Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11000
(777 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 155 1e-36
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 126 6e-28
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 124 2e-27
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 112 1e-23
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 101 2e-20
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 100 5e-20
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 97 6e-19
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 94 3e-18
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 93 7e-18
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 90 7e-17
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 88 2e-16
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 88 3e-16
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 86 8e-16
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 80 5e-14
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 80 7e-14
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 77 7e-13
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 76 9e-13
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 74 3e-12
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 74 3e-12
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 68 3e-10
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 66 7e-10
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 66 1e-09
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 64 5e-09
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 63 9e-09
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 62 1e-08
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 60 6e-08
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 59 1e-07
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 59 1e-07
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 58 3e-07
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 56 1e-06
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 55 2e-06
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 50 9e-05
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 48 3e-04
UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole gen... 45 0.002
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 40 0.092
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 38 0.21
UniRef50_Q7F729 Cluster: OSJNBa0004B13.22 protein; n=2; Oryza sa... 36 1.1
UniRef50_Q2CIU6 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_A3LGX4 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q23TC4 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q4WUX5 Cluster: Sensor histidine kinase/response regula... 34 4.6
UniRef50_Q15911 Cluster: Zinc finger homeobox protein 3; n=25; A... 34 4.6
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_Q5KN72 Cluster: Uv excision repair protein rhp23, putat... 33 6.0
UniRef50_UPI0000E1F6E9 Cluster: PREDICTED: hypothetical protein;... 33 8.0
UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio rerio|... 33 8.0
UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16... 33 8.0
UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 155 bits (376), Expect = 1e-36
Identities = 71/84 (84%), Positives = 81/84 (96%)
Frame = +3
Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 686
+LD +FGSWKTPSK+KKNFNLPQPKMANTDL+RLLKS+EIR+VLRAP KRV+RATRKLNP
Sbjct: 124 RLDAIFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRRVLRAPIKRVVRATRKLNP 183
Query: 687 LTNNKAMLKLNPYAAVLKRKAILE 758
LTN KAMLKLNPYAAVLK+KA+L+
Sbjct: 184 LTNTKAMLKLNPYAAVLKKKAVLD 207
Score = 144 bits (348), Expect = 3e-33
Identities = 70/124 (56%), Positives = 85/124 (68%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXX 435
KAWSD+LKVYKSQRLRAGKGKMRNRRR+ RKGPLII+NKDQGLTR+FRNIPGV+
Sbjct: 40 KAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGPLIIYNKDQGLTRSFRNIPGVDMVNVNK 99
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSS 615
APGGH+GRF+IWTQSAF L G + +++ P P + + S
Sbjct: 100 LNLLHLAPGGHVGRFMIWTQSAFERLDAIFGSWKTPSKEKKNFNLPQ---PKMANTDLSR 156
Query: 616 LMRS 627
L++S
Sbjct: 157 LLKS 160
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/34 (70%), Positives = 32/34 (94%)
Frame = +2
Query: 152 RGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
RG++++ + E+PLVV+DK+QEINKTKQAVIFLRR
Sbjct: 5 RGYVVDNVSEIPLVVSDKIQEINKTKQAVIFLRR 38
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 126 bits (304), Expect = 6e-28
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 686
+L+ LFG+WK PS KK +NLPQPKMANTDL+RLLKS+EIRKVLR P KRV R+ R+LNP
Sbjct: 262 RLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNP 321
Query: 687 LTNNKAMLKLNPYAAVLKRKAIL 755
LTN + ++KLNPYA VLKR+A L
Sbjct: 322 LTNVRQLIKLNPYAEVLKRRAAL 344
Score = 124 bits (299), Expect = 2e-27
Identities = 59/124 (47%), Positives = 79/124 (63%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXX 435
K W+DI KVYKSQR RAG+G MR+RRRI R+GPL++++KD+GL +AFRNIPG+E
Sbjct: 178 KIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDK 237
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSS 615
APGGH+GRFVIWT+SAF L G + ++ P P + + S
Sbjct: 238 LNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQ---PKMANTDLSR 294
Query: 616 LMRS 627
L++S
Sbjct: 295 LLKS 298
Score = 72.9 bits (171), Expect = 8e-12
Identities = 32/50 (64%), Positives = 44/50 (88%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
L ++AA+GVPALVQ++GH+I+ + E PLVV+D+VQ++ KTKQAVIFLRR
Sbjct: 127 LVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRR 176
Score = 48.0 bits (109), Expect = 3e-04
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK +RRWH
Sbjct: 96 GNMCRGGRMFAPTKTFRRWH 115
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 124 bits (299), Expect = 2e-27
Identities = 57/94 (60%), Positives = 67/94 (71%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXX 435
KAW+DI KVY SQR+RAGKGKMRNRRRIQR+GP II+N+D G+ +AFRNIPG+
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGR 537
APGGH+GRF IWT+SAF L G R
Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWR 268
Score = 100 bits (240), Expect = 4e-20
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 683
R+LD L+G+W+ + K N+NLP KM NTDL+R+LKS EI++ LRAP K++ R K N
Sbjct: 258 RKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKN 317
Query: 684 PLTNNKAMLKLNPYAAVLKRKAIL 755
PL N + MLKLNPYA ++R IL
Sbjct: 318 PLKNLRIMLKLNPYAKTMRRNTIL 341
Score = 60.9 bits (141), Expect = 3e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
++AA+ +PALV ++GH IE++PELPLVV DKV+ KTK+AV+ L++
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKK 173
Score = 52.0 bits (119), Expect = 2e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK WRRWH
Sbjct: 93 GNMCRGGRMFAPTKTWRRWH 112
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 112 bits (269), Expect = 1e-23
Identities = 50/90 (55%), Positives = 66/90 (73%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXX 438
A++DI KV S+ +R+GKGKMRNRR +QR+GPL+++++D G+TRAFRNIPGVE
Sbjct: 179 AYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFRNIPGVELCSVDRL 238
Query: 439 XXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGH+GRF+IWT+SAF L G
Sbjct: 239 GLLTLAPGGHVGRFIIWTKSAFEKLDSIFG 268
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR--ATRKL 680
+LD +FG+ + S KK + P MA TDLTRL+ SDEI+ L AP IR A K
Sbjct: 262 KLDSIFGTSTSKSASKKGWKPPTNIMAQTDLTRLINSDEIQSALNAPKLGAIRAHAPLKR 321
Query: 681 NPLTNNKAMLKLNPYAAVLK 740
NPL N AM KLNPYA V +
Sbjct: 322 NPLKNKSAMDKLNPYAKVAR 341
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
++AA+ VP+L+ ARGH +E +PE+PLVV D I KT +AV L++
Sbjct: 130 AIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQ 176
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 101 bits (243), Expect = 2e-20
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Frame = +1
Query: 241 LPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG---LTRAFRNIPG 411
L +A A +D K S++LRAGKGK+R RR QR+GPL+I+N D+ L +AFRNIPG
Sbjct: 149 LLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPG 208
Query: 412 VEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
VE APGGHLGRF++WT SAFG+L G
Sbjct: 209 VETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYG 247
Score = 63.3 bits (147), Expect = 7e-09
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Frame = +3
Query: 510 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLR-----APNKRVIRATR 674
LD ++GS PS KK+F LP M DL++++ S +I+KVLR A +KR + +
Sbjct: 242 LDTIYGSTTEPSALKKDFLLPSTMMKQPDLSKIINSSDIQKVLRPVRGGAVSKRGV--VQ 299
Query: 675 KLNPLTNNKAMLKLNPYAAVLKRKAI 752
K NPL N + L+LNPYAA ++ +
Sbjct: 300 KKNPLKNFQVQLRLNPYAATFSKEKL 325
Score = 48.0 bits (109), Expect = 3e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCR GRMFAPTK WR+WH
Sbjct: 69 GNMCRSGRMFAPTKVWRKWH 88
Score = 42.7 bits (96), Expect = 0.010
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKV---QEINKTKQAVIFLR 250
++AA+G PAL+ ARGH + +PE+PLV++ I KT AV L+
Sbjct: 103 ALAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVALLK 151
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 100 bits (239), Expect = 5e-20
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 435
A+ D K S + GKGKMRNRR I RKGPLI++ + L +AFRNIPGVE
Sbjct: 39 AYLDTEKAKDSHAIHPGKGKMRNRRYISRKGPLIVYGMEGAKLVKAFRNIPGVEVANVDR 98
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSL-TPYSGHGRHHQNKRRTSTCPNRRW 585
APGGHLGRFVIWT+S+F L + Y + + +R + CP ++W
Sbjct: 99 LNLLKLAPGGHLGRFVIWTKSSFEKLDSIYRSFEKKLRRRRMGTCCPVKKW 149
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 149 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
ARGH IE +PELPLV+ D + + KT A+ L++
Sbjct: 2 ARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQ 36
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 96.7 bits (230), Expect = 6e-19
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Frame = +3
Query: 456 SGRPSWT-FRHLDSVRIRQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 632
S RPS T L + +LD L+G+W + K N+NLP KM NTDL+R+LKS EI++
Sbjct: 80 SSRPSETSLELLYLIAFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 139
Query: 633 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 755
L+AP K++ R K NPL N MLKLNPYA ++R IL
Sbjct: 140 ALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTIL 180
Score = 47.2 bits (107), Expect = 5e-04
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRN 327
KAW+DI KVY SQR+RAGKGKMRN
Sbjct: 38 KAWNDIKKVYASQRMRAGKGKMRN 61
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/35 (51%), Positives = 28/35 (80%)
Frame = +2
Query: 149 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
++GH I ++PELPLVV DKV+ KT++AV+ L++
Sbjct: 2 SKGHRIGEVPELPLVVEDKVEGYKKTEEAVLLLKK 36
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NKDQGLTRAFRNIPGVEXXXXXX 435
A+SD+LKV S+ +RAG+GKMR R+ +RKGPL+++ N D +AFRNIPGV+
Sbjct: 177 AYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVEN 236
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APG H+GRF+IWT+SAF L G
Sbjct: 237 LSVLNLAPGCHIGRFIIWTESAFKKLNTIFG 267
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI-RATRKL 680
++L+ +FG+ K ++ K F + +MA D+ R++ + E K+LRA K V+ + ++
Sbjct: 260 KKLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVVVAAEKAKLLRA--KIVLPKVPKRA 317
Query: 681 NPLTNNKAMLKLNPYAAVLKRK 746
NPL N AM+KLNPYA + K
Sbjct: 318 NPLKNWAAMVKLNPYAKIASHK 339
Score = 52.8 bits (121), Expect = 9e-06
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 VAATGVPALVQARGHIIEKIPELPLVVADK-VQEINKTKQAVIFLRR 253
+AA+ VPALV ARGH I +P++PLVV K + I KTKQAV L++
Sbjct: 128 IAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKK 174
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 93.1 bits (221), Expect = 7e-18
Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN---KDQGLTRAFRNIPGVEXXXX 429
A D+ KV S++LRAGKGK+R RR QR+GPL++++ + L RAFRN+PGVE
Sbjct: 178 ALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKELVRAFRNLPGVETCDV 237
Query: 430 XXXXXXXXAPGGHLGRFVIWTQSAFGSL 513
APGGHLGRF+IW+ SAF +L
Sbjct: 238 YSLNLLQLAPGGHLGRFIIWSSSAFKAL 265
Score = 62.9 bits (146), Expect = 9e-09
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +3
Query: 492 SVRIRQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI--R 665
S + LD ++G+ PS KK+F LP ++ D+ RL+ S E++ V+RA + R
Sbjct: 259 SSAFKALDNIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQSVIRAAKGSALTKR 318
Query: 666 A-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 752
A +K NPL N + +L+LNPYAA ++ I
Sbjct: 319 AGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348
Score = 48.0 bits (109), Expect = 3e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCR GRMFAPTK WR+WH
Sbjct: 92 GNMCRSGRMFAPTKVWRKWH 111
Score = 40.3 bits (90), Expect = 0.052
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQE 214
++AA+GVPAL+ ARGH I ++ E+PLV+ +V E
Sbjct: 126 ALAASGVPALLFARGHQISEVAEVPLVINSEVFE 159
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 89.8 bits (213), Expect = 7e-17
Identities = 44/93 (47%), Positives = 58/93 (62%)
Frame = +1
Query: 250 APKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXX 429
A KA D+ +S+R+R G GK RNRR QR+G LI+ ++++GL AFRNI GV+
Sbjct: 173 ALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVDISNV 232
Query: 430 XXXXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGHLGRF+IWT+ A+ L G
Sbjct: 233 XRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYG 265
Score = 56.8 bits (131), Expect = 6e-07
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAV 238
++AA+ P+LV ARGH I+ +PELPLVV+D V++I KTK+AV
Sbjct: 127 AIAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAV 168
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA---PNKRVIRATR 674
++LD L+G+ + K + P P + NTDL+R++ S ++ VL+A +K++I R
Sbjct: 258 KKLDKLYGTRFRTALLKNEYKHPTPSVTNTDLSRIIHSPTVQSVLKARGKQSKKIINVRR 317
Query: 675 KL---NPLTNNKAMLK 713
L + L+ N A +K
Sbjct: 318 NLLIASKLSQNNARIK 333
Score = 36.3 bits (80), Expect = 0.85
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 15 NMCRGGRMFAPTKPWRRWH 71
N RGG M++P K WRRWH
Sbjct: 94 NSARGGHMYSPLKVWRRWH 112
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 88.2 bits (209), Expect = 2e-16
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXX 435
A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++ L +AFRN+PGVE
Sbjct: 23 AFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTR 82
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRH 540
APGG LGRFVIWTQSAF +L G R+
Sbjct: 83 LNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRY 117
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +3
Query: 510 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIRATRKLNP 686
LD LFG+++ S K + L +P + N DL R++ S++++ KV A V+ +K NP
Sbjct: 108 LDKLFGTYRYSSILKDGYQLLRPLLTNPDLARIINSNQVQEKVQAAKQTTVLHEVQKKNP 167
Query: 687 LTNNKAMLKLNPYA 728
L N+KA+ +LNPYA
Sbjct: 168 LKNSKALDRLNPYA 181
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 87.8 bits (208), Expect = 3e-16
Identities = 40/82 (48%), Positives = 54/82 (65%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 447
D+ + S+ +RAG+GKMRNRR I RKGPL+I+N + + R FRN+PGV+
Sbjct: 167 DVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED-VARGFRNLPGVDLCHVSSIRLL 225
Query: 448 XXAPGGHLGRFVIWTQSAFGSL 513
APG H GR ++WT+SAF SL
Sbjct: 226 ELAPGSHPGRLILWTKSAFASL 247
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +3
Query: 552 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAA 731
K+N+ LP+ + TD+ R+L+SD ++K P + + RK++P ++ +A+ +L+P
Sbjct: 254 KQNYTLPRSCITQTDIERILQSDAVQKTF-VPKRDPLVIERKVDPFSSKEALARLDPSGT 312
Query: 732 VLKR 743
V+ +
Sbjct: 313 VMPK 316
Score = 39.1 bits (87), Expect = 0.12
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
+ ++AA+ ALV+ARGH I +P +PLVV + KTK A+ ++
Sbjct: 114 VASALAASANAALVEARGHRIADVPSIPLVV--DTDNVTKTKDALAIIK 160
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 86.2 bits (204), Expect = 8e-16
Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXX 435
A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++ L +AFRN+PGVE
Sbjct: 177 AFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTR 236
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRH 540
APGG LGRFVIWTQSAF L G R+
Sbjct: 237 LNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGTYRY 271
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIRATRKLNP 686
LD LFG+++ S K + L +P + N DL R++ S++++ KV A +V+ +K NP
Sbjct: 262 LDKLFGTYRYASVLKDGYQLLRPLLTNPDLARIINSNQVQEKVQPAKTTKVLHDVQKKNP 321
Query: 687 LTNNKAMLKLNPYAAVLKRKAI 752
L N KAM +LNPYA + A+
Sbjct: 322 LKNTKAMDRLNPYAKKQRAAAV 343
Score = 56.4 bits (130), Expect = 7e-07
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
+VAATG+ LV ARGH I ++P++PLVV DK++ KT A+ FL+R
Sbjct: 128 AVAATGIVPLVLARGHRISQVPQIPLVVEDKIESYEKTTDALNFLKR 174
Score = 38.7 bits (86), Expect = 0.16
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GN CR GRM P K WRRWH
Sbjct: 94 GNQCRKGRMSLPIKVWRRWH 113
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 80.2 bits (189), Expect = 5e-14
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRV-IRATRKLN 683
+LD L+G+W + K N+NLP KM NTDL+R+LK I++ LRAP KR+ R +K N
Sbjct: 176 KLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILKRPGIQRALRAPRKRIHRRVLKKKN 235
Query: 684 PLTNNKAMLKLNP 722
PL N + MLKLNP
Sbjct: 236 PLKNLRLMLKLNP 248
Score = 73.3 bits (172), Expect = 6e-12
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 393
KAW+DI KVY SQR+RAGKGKMRNRR IQR+G II+N+D G+ +A
Sbjct: 116 KAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNGIIKA 161
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 79.8 bits (188), Expect = 7e-14
Identities = 37/82 (45%), Positives = 51/82 (62%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 447
++ ++ KS +LRA GKMRNR+ GPLII++ D G+ +AFRNIPGV+
Sbjct: 179 EVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLL 238
Query: 448 XXAPGGHLGRFVIWTQSAFGSL 513
APGG +GR IW++ AF L
Sbjct: 239 KLAPGGSIGRLCIWSEDAFKKL 260
Score = 49.6 bits (113), Expect = 9e-05
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 683
++LD ++G KKN+ LP+P + N D+ R++ SD+++ L + T+ N
Sbjct: 258 KKLDVIYGKTFQKYVTKKNYILPKPIVNNADIYRIINSDQVQASLLDKKSPCKKRTQNKN 317
Query: 684 PLTNNKAMLKLNPYAAVLKRKAILEL 761
LTN +LNP +L+ A+ ++
Sbjct: 318 SLTNFAVRCRLNPAYKLLRALAVRKM 343
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFL 247
S+AA+G+ +LV ARGH I + E+PLV ++ ++ + KTK A+ FL
Sbjct: 127 SIAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTKDALKFL 171
Score = 42.7 bits (96), Expect = 0.010
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRW 68
GNMCRGG MF PTK WRRW
Sbjct: 93 GNMCRGGGMFNPTKIWRRW 111
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 76.6 bits (180), Expect = 7e-13
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +1
Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 441
+ D+ +V R+ KGK R +KGPL+I+N+D+G+ +AFRNIPGVE
Sbjct: 174 YGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISVKALA 233
Query: 442 XXXXAPGGHLGRFVIWTQSAFGSL 513
AP +GR +WT+SAF +L
Sbjct: 234 LAKLAPAAQVGRLTVWTESAFKAL 257
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +2
Query: 71 PSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
PSRQ A + ++AAT V LVQARGH++ ++ E+P+VV D VQEI +T+ AV L+
Sbjct: 113 PSRQRKFA---IASAIAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKRTRDAVELLK 169
Query: 251 R 253
+
Sbjct: 170 K 170
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 76.2 bits (179), Expect = 9e-13
Identities = 40/120 (33%), Positives = 62/120 (51%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 447
++ ++ S +R GKGKMRNRRR+ GPL+++ +D G+ +A RNI GV+
Sbjct: 182 EMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLL 241
Query: 448 XXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRS 627
APGG GR I+T+ A L G H + + T P P +T+ + ++ S
Sbjct: 242 RLAPGGTFGRLTIFTKGAIKRLQEIYGSYTHGSSSKVGYTLPR---PAMTNADITRIINS 298
Score = 62.9 bits (146), Expect = 9e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRPRHGL 268
+ ++AATG P+LV ARGH I +PELPLV+++++Q INKT AV F + GL
Sbjct: 125 VAAAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGKGL 179
Score = 53.6 bits (123), Expect = 5e-06
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Frame = +3
Query: 501 IRQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-----KRVIR 665
I++L ++GS+ S K + LP+P M N D+TR++ S E++ VLR + R
Sbjct: 260 IKRLQEIYGSYTHGSSSKVGYTLPRPAMTNADITRIINSTEVQSVLRPLRGFRCMGSMGR 319
Query: 666 ATRKLNPLTNNKAMLKLNP-YAAVLKRKAILELPEGR 773
+ K N LTN LNP Y ++ K + ++P R
Sbjct: 320 SKTKKNNLTNLTKRACLNPAYTSLRKSARLAQIPGTR 356
Score = 39.1 bits (87), Expect = 0.12
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGG MF+P K +RR+H
Sbjct: 94 GNMCRGGHMFSPNKTYRRFH 113
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 74.1 bits (174), Expect = 3e-12
Identities = 42/104 (40%), Positives = 53/104 (50%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 447
++ +V KS+ +R GKGKMRNRR QRKG LI+ + + FRNI GV+
Sbjct: 176 ELKRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEML-GFRNIRGVDQMSIDSLDLL 234
Query: 448 XXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNR 579
APGG GR +IWT+SAF L G PNR
Sbjct: 235 ELAPGGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLPNR 278
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
+VAA+ +LV+ARGH I + LP++V+D + + KTK AV LR
Sbjct: 124 AVAASAQASLVEARGHRISDVKMLPIIVSDDIAKARKTKDAVEILR 169
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 74.1 bits (174), Expect = 3e-12
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1
Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 441
++D+ + + +R RAG+GKMR RR +++K L++ KD G+ +A +N+PGV+
Sbjct: 164 YADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLN 223
Query: 442 XXXXAPGGHLGRFVIWTQSA 501
APG H GR +WT+SA
Sbjct: 224 VELLAPGCHPGRLTVWTKSA 243
Score = 33.1 bits (72), Expect = 8.0
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
L ++AAT LV+ R H+ E ELP VV+++++ + +TK R
Sbjct: 113 LKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFR 159
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +1
Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 441
W+D+ + ++R+RAGKGK R RR ++ K LI+ ++D+G+ RN PGV+
Sbjct: 171 WADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKLGARNHPGVDVVEAMHLG 230
Query: 442 XXXXAPGGHLGRFVIWTQSA 501
APG H GR ++T A
Sbjct: 231 VEHLAPGAHPGRLTVFTPGA 250
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/51 (37%), Positives = 34/51 (66%)
Frame = +2
Query: 98 SGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
+ L ++AAT P V+ RGH+I+ +P LP+VV D+++ +NK ++ F +
Sbjct: 116 AALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFK 166
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +1
Query: 265 SDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXX 444
+D+ + + +RAGKG MR R+ K L++ ++ GL +A RNIPGV+
Sbjct: 221 ADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARNIPGVDIVVAKDLSA 280
Query: 445 XXXAPGGHLGRFVIWTQSAFGSL 513
APGG GR +WT++A G+L
Sbjct: 281 EDLAPGGDAGRLTVWTKAAIGAL 303
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 447
DI++ K +++++GKGK+R R+ KGPL++ D+G++ RN GV+
Sbjct: 169 DIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGARNHAGVDVVEVNNINAE 228
Query: 448 XXAPGGHLGRFVIWTQSAFGSL 513
APG H GR I+T+SA L
Sbjct: 229 LLAPGTHAGRLTIYTKSAIEKL 250
Score = 37.5 bits (83), Expect = 0.37
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQ 232
++AAT LV+ RGH + ++ ++P V+ D+++ + TK+
Sbjct: 117 AIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKE 156
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +1
Query: 265 SDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXX 444
+ I++ ++L++GKGKMRNRR + GPL++F + ++ RNI ++
Sbjct: 172 NSIVRNKLKRKLKSGKGKMRNRRFKKPTGPLLVFKNN---LKSLRNIANIDCMKISALNL 228
Query: 445 XXXAPGGHLGRFVIWTQSAFGSLTPYS 525
APGGHLGR IW+ AF L S
Sbjct: 229 TKLAPGGHLGRLCIWSSKAFQMLNTIS 255
Score = 41.5 bits (93), Expect = 0.023
Identities = 14/51 (27%), Positives = 35/51 (68%)
Frame = +2
Query: 95 ESGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFL 247
+S + ++A++ + +++ +RG+ ++ IPE+P V+ D +++I KT+ + L
Sbjct: 116 KSAIFSAIASSSIVSIIVSRGYRVKTIPEIPFVIEDSIEKIPKTRDLIKIL 166
Score = 39.9 bits (89), Expect = 0.069
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 9 LGNMCRGGRMFAPTKPWRRWH 71
+ N CRGGR+F PT WR+WH
Sbjct: 87 IANFCRGGRIFNPTTIWRKWH 107
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 62.9 bits (146), Expect = 9e-09
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = +3
Query: 579 KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILE 758
KM N+DL+R+LK EI++ L+AP K + K NPLTN + MLKLNP A + R I
Sbjct: 3 KMMNSDLSRILKIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTI-- 60
Query: 759 LPEGR 773
LPE R
Sbjct: 61 LPEAR 65
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +1
Query: 247 EAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXX 426
+A A D+ +V S+ +RAG+GKMRNRR + R+GP+++ ++G TRAFRNI G++
Sbjct: 171 KAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG-TRAFRNIFGLDLAN 229
Query: 427 XXXXXXXXXAPGG 465
APGG
Sbjct: 230 VSALTLLHLAPGG 242
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
++AA+ VP+LV +RGH I +PE+PLVV D +Q KTK+A+ FL+
Sbjct: 126 ALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLK 171
Score = 47.2 bits (107), Expect = 5e-04
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK +RRWH
Sbjct: 92 GNMCRGGRMFAPTKIFRRWH 111
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 60.1 bits (139), Expect = 6e-08
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 247 EAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQGLTRAFRNIPGVEXX 423
EA W D+ + + ++RAGKGKMR RR + K L++ + + L A RN PGV+
Sbjct: 189 EALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVV 248
Query: 424 XXXXXXXXXXAPGGHLGRFVIWTQSAFGSL 513
APGG GR +WT A L
Sbjct: 249 AVNNLNILVLAPGGVPGRLTLWTAPAVEKL 278
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQA 235
++AAT + V ARGH++EK+P LP+VV ++IN+ K+A
Sbjct: 144 AIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEA 184
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXXX 438
+ D+ +V + R+RAGKGKMR R+ + GPLII + + + +A RN+ GV+
Sbjct: 173 YDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDV 232
Query: 439 XXXXXAPGGHLGRFVIWTQSA 501
APG H GR I+T+S+
Sbjct: 233 SVIHLAPGAHPGRLTIYTESS 253
Score = 35.1 bits (77), Expect = 2.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
+++AT A V+ARGH+ + P+VV D + + T + FL++
Sbjct: 123 ALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKK 169
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +1
Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 441
+ DI + + + +RAG+GKMR RR Q K LI+ + +AFR++PGV+
Sbjct: 168 YEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSSAM-KAFRSLPGVDIASPNSLS 226
Query: 442 XXXXAPGGHLGRFVIWTQSAFGSL 513
APGG GR I+T+ A SL
Sbjct: 227 IRKLAPGGVGGRLTIFTEGAIESL 250
Score = 39.1 bits (87), Expect = 0.12
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
++A T V+ RGH ++ +LP+VV D V+ INKTK A+ L+
Sbjct: 118 AIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLK 163
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 268 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQGLTRAFRNIPGVEXXXXXXXXX 444
++ +VY+ +R RAGKGK R R I+RKGPLI+ N ++ L +A NIPG++
Sbjct: 180 ELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNV 238
Query: 445 XXXAPGGHLGRFVIWTQSAFGSL 513
APG GR +I ++ A +L
Sbjct: 239 ELLAPGAKPGRLLIISKDALETL 261
Score = 33.9 bits (74), Expect = 4.6
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQ 232
++AAT LV+ARGHII+K +P+VV D ++++ KTK+
Sbjct: 131 ALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKE 167
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 241 LPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVE 417
L E+ + D+L+ + +R AGKGKMR RR K L + + L A + +PGV+
Sbjct: 172 LLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVD 231
Query: 418 XXXXXXXXXXXXAPGGHLGRFVIWTQSAFGSLT 516
APGGH GR I+T A L+
Sbjct: 232 VVTPTLLSVLHLAPGGHPGRLTIYTTEALKLLS 264
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 292 QRLRAGKGKMRNRRRIQRKGPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 465
+R+ G+ R+ R+ + GPLII +G RAFRNIPGVE AP G
Sbjct: 180 KRIDKVTGRARDGRKKRPVGPLIILRATAVEG-KRAFRNIPGVEVACVERLNLLKLAPAG 238
Query: 466 HLGRFVIWTQSAFGSLTPY 522
LGR +W++SAF +L Y
Sbjct: 239 ALGRLCVWSKSAFEALDDY 257
Score = 51.2 bits (117), Expect = 3e-05
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFL 247
L ++AAT V +V +RGH IE + E+P+VV D +++INKTK AV L
Sbjct: 123 LASALAATAVVPVVMSRGHRIEALREVPMVVDDAIEQINKTKDAVKLL 170
Score = 39.5 bits (88), Expect = 0.092
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 15 NMCRGGRMFAPTKPWRRWH 71
N CR G M+APT+ WRRWH
Sbjct: 93 NFCRAGGMYAPTRVWRRWH 111
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 49.6 bits (113), Expect = 9e-05
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFL 247
L SVAAT LV +RGH +E +PELPLV+ D ++ + KT+ AV L
Sbjct: 123 LAVSVAATASVPLVMSRGHRVESVPELPLVLDDTMETLTKTRDAVELL 170
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +1
Query: 322 RNRRRIQRK--GPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIW 489
R +R+ +++ GPL++ +G RAFRNIPGV+ AP G LGR VI+
Sbjct: 187 RTKRKGKKRPVGPLVVMRSTAVEG-KRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIF 245
Query: 490 TQSAF 504
++SAF
Sbjct: 246 SKSAF 250
Score = 39.1 bits (87), Expect = 0.12
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 15 NMCRGGRMFAPTKPWRRWH 71
N CR G MFAPT+ WR WH
Sbjct: 93 NFCRAGGMFAPTRTWRHWH 111
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK +RRWH
Sbjct: 210 GNMCRGGRMFAPTKVFRRWH 229
>UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_113, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +2
Query: 116 VAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
+A + V +LV ARGH IE + ELPLV+ D + ++KT + L++
Sbjct: 13 IATSAVLSLVMARGHRIESVLELPLVIGDSTKSVDKTSTTIDILKQ 58
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 39.5 bits (88), Expect = 0.092
Identities = 26/91 (28%), Positives = 45/91 (49%)
Frame = +1
Query: 241 LPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEX 420
L EA +DI + ++ +++AG+G R R+ +R ++ D+ T A RN+ G +
Sbjct: 156 LLEALDVHADIDRADET-KIKAGQGSARGRK-YRRPASILFVTSDEPSTAA-RNLAGADV 212
Query: 421 XXXXXXXXXXXAPGGHLGRFVIWTQSAFGSL 513
APGG GR ++T+SA +
Sbjct: 213 ATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 38.3 bits (85), Expect = 0.21
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQ 232
L ++AAT + V RGHII+ I ELP+V++D ++ ++K +
Sbjct: 120 LCSAIAATASKSTVAGRGHIIDGI-ELPIVISDDIESVSKASE 161
Score = 35.1 bits (77), Expect = 2.0
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +1
Query: 286 KSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 465
+ ++ R GK +R R + K L + D + RA PGV APG
Sbjct: 179 EGRKPRTGKSALRGRPKKIGKSILFVVGADGPVIRAVGGFPGVTARPARDLSVLDLAPGA 238
Query: 466 HLGRFVIWTQSAFGSLTPYS 525
R +++++A SL S
Sbjct: 239 EPARLTVYSKAAIESLAGIS 258
>UniRef50_Q7F729 Cluster: OSJNBa0004B13.22 protein; n=2; Oryza
sativa (japonica cultivar-group)|Rep: OSJNBa0004B13.22
protein - Oryza sativa subsp. japonica (Rice)
Length = 248
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 43 PPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTHY*KDSRASPGCSRQSP 210
P S +GT AS G+RPW R C+ R RS T + A P R +P
Sbjct: 99 PDSSSNIIGTAASIFSGGQRPWACRSCHLRGGCRSSATTR--RRVTAEPRALRSTP 152
>UniRef50_Q2CIU6 Cluster: Putative uncharacterized protein; n=1;
Oceanicola granulosus HTCC2516|Rep: Putative
uncharacterized protein - Oceanicola granulosus HTCC2516
Length = 966
Score = 35.5 bits (78), Expect = 1.5
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -1
Query: 405 DVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRP---CLGRLRKMT 235
DV+ A+ L V G++T+DT T S +T V+ +D R +G +
Sbjct: 365 DVSVTATDALGNVATTSGTVTVDTVTTLTIDTASVETDGTVN-RDERSDGVTIGGTAEAG 423
Query: 234 ACLVLLISWTLSATTRGSSGIFSIMCPLA*TSAGT 130
A +VL +S T TT GSSG +S+ + +GT
Sbjct: 424 ATVVLTVSGTDYTTTAGSSGSWSVEVAASDIPSGT 458
>UniRef50_A3LGX4 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas aeruginosa 2192|Rep: Putative
uncharacterized protein - Pseudomonas aeruginosa 2192
Length = 489
Score = 34.3 bits (75), Expect = 3.4
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 49 RSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTHY*KD-SRASPGCSRQSPGDQQD 225
R+ G G S + RP R R RR AR R + SR++PGCSR+S ++
Sbjct: 12 RATGSAGRWGRGSPAA-RPCR-RSHRRRTGARRSVRWCGSRARSRSAPGCSRRSDRGRRS 69
Query: 226 QTGCHLPEAPKAWSDILKVYKSQRLRAGKGKMRNRRR 336
P AP A + +R R G G+ R RR
Sbjct: 70 SGSSRSPSAPAA---AVPAAARRRSRRGAGRSRTGRR 103
>UniRef50_Q23TC4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 966
Score = 34.3 bits (75), Expect = 3.4
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +3
Query: 573 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 752
Q K AN + RLL S+ + ++P+ ++ KLNP++ N + L LN + L +K++
Sbjct: 330 QHKRANIQV-RLLSSEISKNQSQSPSNNILNQQNKLNPISTNTSQL-LNKQISQLNQKSL 387
Query: 753 LE 758
+
Sbjct: 388 TQ 389
>UniRef50_Q4WUX5 Cluster: Sensor histidine kinase/response
regulator, putative; n=1; Aspergillus fumigatus|Rep:
Sensor histidine kinase/response regulator, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 177
Score = 33.9 bits (74), Expect = 4.6
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +1
Query: 82 TSDSGERPWRQRCCYRRPSARSG*RTHY*KDSRASPGCSRQSPGDQQDQTGC-HLPEAPK 258
T D RP R RR R H KD RA P +R+ QD G H + P+
Sbjct: 69 TRDDDSRPLRPH--QRRRRHLHYRRHHPGKDRRAFPAANRRGSSAAQDPAGAVHRHDQPR 126
Query: 259 AWSDILK---VYKSQRLRA----GKGKMRNRRRIQR 345
+ L+ +++ R G+G+ R RRR++R
Sbjct: 127 STEPALRHPALHRGHSQRGAPDPGRGRARRRRRMRR 162
>UniRef50_Q15911 Cluster: Zinc finger homeobox protein 3; n=25;
Amniota|Rep: Zinc finger homeobox protein 3 - Homo
sapiens (Human)
Length = 3703
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 10 SVTCVVVDVCSPPRSPGGVGTVASTSDSGERPWRQR 117
S T + D CSP SPG G+ + DSG+RP ++R
Sbjct: 2915 SETSSLADPCSP--SPGASGSAGKSGDSGDRPGQKR 2948
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 33.5 bits (73), Expect = 6.0
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +3
Query: 285 QVSASSCW*G*NAQPSSYPA*GTPHNLQQGSGSD---SRLPQHPRCGXXXXXXXXXXXXG 455
+++ CW +AQP P G P + G +R+PQH R G G
Sbjct: 236 RLARDPCWPRQDAQP---PLRGAPRS-DAGDAEQQGHARVPQHLRAGPGECERAEPAAPG 291
Query: 456 SGRPSWTFRHLDSVRIR 506
+ P W R LD+V +R
Sbjct: 292 ARWPRWPLRDLDAVCVR 308
Score = 33.1 bits (72), Expect = 8.0
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 11 R*HVSWWTYVRPHEALAALAPSRQP 85
R HV WW +VR E L LAP QP
Sbjct: 144 RQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_Q5KN72 Cluster: Uv excision repair protein rhp23,
putative; n=2; Filobasidiella neoformans|Rep: Uv
excision repair protein rhp23, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 406
Score = 33.5 bits (73), Expect = 6.0
Identities = 27/68 (39%), Positives = 32/68 (47%)
Frame = +2
Query: 44 PHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINK 223
P A A A S QP ESGLGGS TG PAL A ++E E V+ N
Sbjct: 123 PASAPAPAAESAQPSAVESGLGGSF-VTG-PALQAAIDGMVEMGFERDQVIRALRASFNN 180
Query: 224 TKQAVIFL 247
+AV +L
Sbjct: 181 PDRAVEYL 188
>UniRef50_UPI0000E1F6E9 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 539
Score = 33.1 bits (72), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 38 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIP 178
+RP + ALAP+ +PP S G A G P L+ A G +++ +P
Sbjct: 151 LRPSSRIRALAPAPRPPLLPSAQG---APHGQPTLICAPGSLLQPLP 194
>UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio
rerio|Rep: Ribosomal protein L4 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 108
Score = 33.1 bits (72), Expect = 8.0
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1
Query: 7 LSVTCVVVDVCSPPRSPGGVGTVAS 81
LS CVVVD C P+ PG VGT S
Sbjct: 40 LSEICVVVDACLLPQRPGVVGTAGS 64
>UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein sre-16 - Caenorhabditis elegans
Length = 337
Score = 33.1 bits (72), Expect = 8.0
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 161 IIEKIPELPLVVADKVQEINKTKQAVIFLRRPRHGLISLRCTSLSVFVLVRVKCAT 328
I+EKI E + KV+E + Q IFL+ R LIS SL++ VL R+ CAT
Sbjct: 64 ILEKILE----IMGKVEEYESSNQPYIFLQFVRTALISTPFHSLAITVLERL-CAT 114
>UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1513
Score = 33.1 bits (72), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 98 SPLSEVDATVPTPPGLRGGEHTSTTT 21
+P E+ A +P PPGL G+H S+ T
Sbjct: 243 TPEGEIKAEIPKPPGLNDGDHVSSIT 268
>UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1512
Score = 33.1 bits (72), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 98 SPLSEVDATVPTPPGLRGGEHTSTTT 21
+P E+ A +P PPGL G+H S+ T
Sbjct: 243 TPEGEIKAEIPKPPGLNDGDHVSSIT 268
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,281,285
Number of Sequences: 1657284
Number of extensions: 16252227
Number of successful extensions: 54604
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54549
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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