Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11000
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    32   0.006
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    25   0.89 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.89 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 71  PSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIP 178
           P    P+  SGLGG ++   +PAL    GH +E +P
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP 111


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 37  CSPPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTH 162
           C+   S     T    + SGE+P+R   C RR S  S   TH
Sbjct: 27  CNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 34  VCSPPRSPGGVGTVASTSDSGERPWRQRCC 123
           VC    S     T    + SGERP+R R C
Sbjct: 54  VCDRRFSQSSSVTTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 37  CSPPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTH 162
           C+   S     T    + SGE+P+R   C RR S  S   TH
Sbjct: 283 CNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 34  VCSPPRSPGGVGTVASTSDSGERPWRQRCC 123
           VC    S     T    + SGERP+R R C
Sbjct: 310 VCDRRFSQSSSVTTHMRTHSGERPYRCRLC 339


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 574  WGRLKFFFCFDGVFHDPNK 518
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 RISDHALGASGR*QPVWSC*SPGLC 201
           R+    LGA     PVW   +PG+C
Sbjct: 606 RLVARGLGAEAM-WPVWCAQNPGMC 629


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 91  SGERPWRQRCCYRRPSARSG*RTH 162
           +GERP++ + C R  + +   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 573 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 752
           Q KM N       +S  +   +  P K VI++ R L P     ++L  N      KRK I
Sbjct: 15  QNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK-I 73

Query: 753 LELPEG 770
             +P G
Sbjct: 74  QFMPYG 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,922
Number of Sequences: 336
Number of extensions: 3642
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)