Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11000
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 122 6e-29
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 122 8e-29
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 30 0.32
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.9
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 25 9.2
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 9.2
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (294), Expect = 6e-29
Identities = 54/91 (59%), Positives = 68/91 (74%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXX 435
KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRR 234
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGHLGRFVIWT+SAFG L G
Sbjct: 235 LNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265
Score = 66.5 bits (155), Expect = 4e-12
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = +3
Query: 510 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLN 683
LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K N
Sbjct: 260 LDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKN 319
Query: 684 PLTNNKAMLKLNPYAAVLK 740
PL N + +LNPYA K
Sbjct: 320 PLKNKAVLSRLNPYAKAYK 338
Score = 62.5 bits (145), Expect = 7e-11
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLK 172
Score = 48.4 bits (110), Expect = 1e-06
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCR GRMFAPTK WR+WH
Sbjct: 93 GNMCRSGRMFAPTKTWRKWH 112
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (293), Expect = 8e-29
Identities = 54/91 (59%), Positives = 68/91 (74%)
Frame = +1
Query: 256 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXX 435
KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRR 234
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGHLGRFVIWT+SAFG L G
Sbjct: 235 LNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265
Score = 68.9 bits (161), Expect = 8e-13
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = +3
Query: 510 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLN 683
LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K N
Sbjct: 260 LDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKN 319
Query: 684 PLTNNKAMLKLNPYAAVLKRKAILELPEGRT 776
PL N + +LNPYA KA ++L G+T
Sbjct: 320 PLKNKAVLARLNPYAKAY--KANVKLNTGKT 348
Score = 62.5 bits (145), Expect = 7e-11
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLK 172
Score = 48.4 bits (110), Expect = 1e-06
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCR GRMFAPTK WR+WH
Sbjct: 93 GNMCRSGRMFAPTKTWRKWH 112
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 378 LILVEDYEGSLTLDTTTVAHFTLTST-KTLRLVHLKDIRPCLGRL 247
L L +Y+ SL LDTT + T KTLR++ L I+ C+G +
Sbjct: 138 LSLDTEYDFSLVLDTTAGTFPSKHITIKTLRMIDLTGIQVCVGNM 182
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 546 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 722
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 35 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH-IIEKIPELPL 190
+ PH L + AP QP E +V P+ +GH I + PL
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVATPPL 906
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/79 (22%), Positives = 40/79 (50%)
Frame = +3
Query: 534 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 713
KTPS +K+ P P + N D L ++ V + P+ + TR + P ++ +++
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAP-QDSSSVVT 642
Query: 714 LNPYAAVLKRKAILELPEG 770
+P + + +A+ ++ +G
Sbjct: 643 PSPTSLLDPARAVRKVIDG 661
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 363 DYEGSLTLDTTTVAHFTLTS-TKTLRLVHLKDIRPCLGRLRKMTACLVLLISWTL 202
D + S + D +V T + LR + + IR C G + + +++++SW +
Sbjct: 323 DLDDSKSSDAKSVTQGTTNLIVEKLRKYNFEHIRQCFGSRKLAISSILVILSWAV 377
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 728 RVRIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 612
+ ++ F H L + +WV+ + +G + PD +RL
Sbjct: 171 KYKVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 495 VRIRQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 674
+ +++L+ +W ++ +PQ K + + LK DEIR+ V+ +
Sbjct: 255 ILLKRLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSD 314
Query: 675 KLN 683
+LN
Sbjct: 315 ELN 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,087
Number of Sequences: 5004
Number of extensions: 60077
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -