Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11000
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 93 2e-19
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 93 2e-19
08_02_1278 - 25838146-25839411 32 0.58
12_02_0955 - 24761373-24761464,24763564-24763771 29 5.4
01_06_0317 + 28425408-28426079,28426286-28426351 29 5.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 5.4
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 9.5
05_03_0446 + 14111667-14111906,14112011-14112418 28 9.5
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 9.5
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 28 9.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 93.1 bits (221), Expect = 2e-19
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 435
A++D K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVER 239
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGHLGRFVIWT+SAF L G
Sbjct: 240 LNLLDLAPGGHLGRFVIWTESAFKKLEEVYG 270
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/84 (45%), Positives = 59/84 (70%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 683
++L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ N
Sbjct: 263 KKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKN 322
Query: 684 PLTNNKAMLKLNPYAAVLKRKAIL 755
PL N A+LKLNPY ++ A L
Sbjct: 323 PLKNVAAVLKLNPYFGTARKMATL 346
Score = 59.7 bits (138), Expect = 3e-09
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
+ ++AAT VP+LV ARGH IE +PELPLV++D + I KT QA+ L++
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQ 177
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK WR+WH
Sbjct: 97 GNMCRGGRMFAPTKTWRKWH 116
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 93.1 bits (221), Expect = 2e-19
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +1
Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 435
A++D K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVER 238
Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSG 528
APGGHLGRFVIWT+ AF L G
Sbjct: 239 LNLLDLAPGGHLGRFVIWTECAFKKLDEVYG 269
Score = 84.6 bits (200), Expect = 8e-17
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = +3
Query: 504 RQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 683
++LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + N
Sbjct: 262 KKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRN 321
Query: 684 PLTNNKAMLKLNPYAAVLKRKAIL 755
PL N A+LKLNPY ++ A L
Sbjct: 322 PLKNVAAVLKLNPYFGTARKMAAL 345
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Frame = +2
Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
+ ++AAT VP+LV ARGH IE +PE PLVV+D ++ I KT Q++ L++
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQ 176
Score = 51.2 bits (117), Expect = 9e-07
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK WRRWH
Sbjct: 96 GNMCRGGRMFAPTKIWRRWH 115
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 253 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 146
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>12_02_0955 - 24761373-24761464,24763564-24763771
Length = 99
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 271 YQTMPWAPQEDDSLFGLVDLLDFVGYN 191
Y + W +EDD F +V+++D + Y+
Sbjct: 73 YMGLKWVGKEDDRAFKIVEIIDVMNYD 99
>01_06_0317 + 28425408-28426079,28426286-28426351
Length = 245
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 43 PPRSPGGVGTVASTSDSGERPWRQRCCYRRPSAR 144
PP P T + + + RPW R RRPSAR
Sbjct: 127 PPPPPPPPDTSVAAAAAAARPWNLRERKRRPSAR 160
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 507 AECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 397
A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 151 ARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 485 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 393
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 8 SR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSVAATG 130
+R HVS +RP ++LA L+P+R +A +G G + A +G
Sbjct: 108 ARRHVS----LRPTKSLAHLSPARASSSAAAGGGSATAPSG 144
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 504 ECGLSPDDETSKMASRSQLQEVQ 436
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 447 QEVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 268
Q L++++ LH D + L+ED + ++ + T V + +T+ LV+LK
Sbjct: 937 QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996
Query: 267 R 265
R
Sbjct: 997 R 997
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,505,025
Number of Sequences: 37544
Number of extensions: 493942
Number of successful extensions: 1787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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